Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   KTE72_RS06725 Genome accession   NZ_CP077741
Coordinates   1354495..1355268 (+) Length   257 a.a.
NCBI ID   WP_031863928.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NL1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1349495..1360268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KTE72_RS06705 (KTE72_06660) trmFO 1349839..1351146 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  KTE72_RS06710 (KTE72_06665) xerC 1351563..1352459 (+) 897 WP_001015606.1 tyrosine recombinase XerC -
  KTE72_RS06715 (KTE72_06670) hslV 1352456..1353001 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  KTE72_RS06720 (KTE72_06675) hslU 1353067..1354470 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  KTE72_RS06725 (KTE72_06680) codY 1354495..1355268 (+) 774 WP_031863928.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  KTE72_RS06730 (KTE72_06685) - 1355319..1355411 (+) 93 WP_001790530.1 hypothetical protein -
  KTE72_RS06735 (KTE72_06690) rpsB 1355610..1356377 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  KTE72_RS06740 (KTE72_06695) - 1356411..1356524 (+) 114 WP_001789890.1 hypothetical protein -
  KTE72_RS06745 (KTE72_06700) tsf 1356559..1357440 (+) 882 WP_000201387.1 translation elongation factor Ts -
  KTE72_RS06750 (KTE72_06705) pyrH 1357577..1358299 (+) 723 WP_000057330.1 UMP kinase -
  KTE72_RS06755 (KTE72_06710) frr 1358318..1358872 (+) 555 WP_001280006.1 ribosome recycling factor -
  KTE72_RS06760 (KTE72_06715) - 1359245..1360015 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28702.08 Da        Isoelectric Point: 5.7563

>NTDB_id=507039 KTE72_RS06725 WP_031863928.1 1354495..1355268(+) (codY) [Staphylococcus aureus strain NL1]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALCKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=507039 KTE72_RS06725 WP_031863928.1 1354495..1355268(+) (codY) [Staphylococcus aureus strain NL1]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTATGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTTATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAG

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

63.813

100

0.638
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.412

100

0.424