Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   VB13_RS07935 Genome accession   NZ_CP077685
Coordinates   1610970..1611644 (-) Length   224 a.a.
NCBI ID   WP_002982458.1    Uniprot ID   A0ABU0A9I5
Organism   Streptococcus pyogenes strain M49 591     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1605970..1616644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VB13_RS07920 (VB13_08150) - 1607608..1608996 (-) 1389 WP_002982466.1 HAMP domain-containing sensor histidine kinase -
  VB13_RS07925 (VB13_08155) - 1608993..1609646 (-) 654 WP_002991237.1 response regulator transcription factor -
  VB13_RS07930 (VB13_08160) - 1609740..1610957 (-) 1218 WP_002993552.1 ABC transporter permease -
  VB13_RS07935 (VB13_08165) amiE 1610970..1611644 (-) 675 WP_002982458.1 ABC transporter ATP-binding protein Regulator
  VB13_RS07940 (VB13_08170) - 1611631..1612899 (-) 1269 WP_011285226.1 efflux RND transporter periplasmic adaptor subunit -
  VB13_RS07945 (VB13_08175) - 1613323..1613607 (-) 285 WP_002982442.1 hypothetical protein -
  VB13_RS07950 (VB13_08180) - 1613754..1614050 (-) 297 WP_002982439.1 DUF4298 domain-containing protein -
  VB13_RS07955 (VB13_08185) - 1614192..1616159 (-) 1968 WP_009880903.1 LPXTG cell wall anchor domain-containing protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24826.67 Da        Isoelectric Point: 5.7977

>NTDB_id=506904 VB13_RS07935 WP_002982458.1 1610970..1611644(-) (amiE) [Streptococcus pyogenes strain M49 591]
MLNLKDIRKSYHLGTEEFAILKGIDLEVNEGDFLAIMGPSGSGKSTLMNIIGCLDKPGSGSYAIEGRDVSSLSDNELADL
RNQKIGFVFQNFNLMPKLTACQNVELPLTYMNVPKKERRKRALEMLKLVGLEERSEFKPMELSGGQKQRVAIARALVTNP
SFILGDEPTGALDTKTSVQIMDLFKQFNDNGKTIIIITHEPEVAALCKKTVILRDGNIEHSDIE

Nucleotide


Download         Length: 675 bp        

>NTDB_id=506904 VB13_RS07935 WP_002982458.1 1610970..1611644(-) (amiE) [Streptococcus pyogenes strain M49 591]
TTGTTAAACCTTAAAGATATTCGAAAAAGCTATCATCTTGGGACTGAAGAATTTGCGATTTTAAAAGGAATCGATTTAGA
AGTTAACGAGGGTGACTTTTTAGCCATCATGGGACCATCAGGTTCGGGAAAGTCAACATTGATGAATATCATTGGGTGTT
TAGATAAGCCTGGCTCTGGCTCATATGCCATTGAAGGCAGAGACGTGTCATCCTTATCTGATAATGAACTTGCTGATTTG
CGTAATCAAAAAATCGGCTTTGTTTTTCAAAACTTTAACCTGATGCCCAAGCTAACAGCTTGTCAAAATGTCGAATTGCC
CTTGACTTATATGAATGTTCCTAAAAAAGAGCGTCGCAAACGAGCCCTAGAGATGTTAAAGCTAGTAGGACTAGAAGAAC
GTAGTGAATTTAAACCGATGGAGCTATCTGGTGGGCAAAAACAGCGTGTAGCGATTGCAAGAGCTTTAGTCACTAACCCG
AGTTTTATCCTTGGTGATGAGCCAACAGGTGCACTAGACACAAAAACCAGCGTCCAAATCATGGACCTATTTAAACAATT
CAATGATAACGGCAAAACGATTATTATCATCACACACGAGCCTGAAGTAGCTGCCTTATGCAAAAAGACGGTGATCCTAA
GAGATGGTAATATAGAACATTCCGATATAGAGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

34.454

100

0.366