Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   KQY30_RS30085 Genome accession   NZ_CP077658
Coordinates   7061775..7063130 (+) Length   451 a.a.
NCBI ID   WP_217309648.1    Uniprot ID   -
Organism   Streptomyces sp. GMY02     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7056775..7068130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQY30_RS30065 (KQY30_30065) - 7057879..7058676 (-) 798 WP_217309644.1 peptidylprolyl isomerase -
  KQY30_RS30070 (KQY30_30070) - 7058878..7059603 (+) 726 WP_217309645.1 MBL fold metallo-hydrolase -
  KQY30_RS30075 (KQY30_30075) hisS 7059618..7060883 (+) 1266 WP_217309646.1 histidine--tRNA ligase -
  KQY30_RS30080 (KQY30_30080) - 7061004..7061639 (+) 636 WP_217309647.1 vitamin K epoxide reductase family protein -
  KQY30_RS30085 (KQY30_30085) rarA 7061775..7063130 (+) 1356 WP_217309648.1 replication-associated recombination protein A Machinery gene
  KQY30_RS30090 (KQY30_30090) - 7063173..7063865 (-) 693 WP_217309649.1 DUF2470 domain-containing protein -
  KQY30_RS30095 (KQY30_30095) rpsD 7064042..7064656 (+) 615 WP_217309651.1 30S ribosomal protein S4 -
  KQY30_RS30100 (KQY30_30100) - 7064684..7066873 (-) 2190 WP_217309653.1 AAA family ATPase -
  KQY30_RS30105 (KQY30_30105) - 7067092..7067535 (+) 444 WP_217309655.1 DUF948 domain-containing protein -
  KQY30_RS30110 (KQY30_30110) - 7067543..7067914 (+) 372 WP_217309657.1 hypothetical protein -

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 47917.39 Da        Isoelectric Point: 6.6030

>NTDB_id=506815 KQY30_RS30085 WP_217309648.1 7061775..7063130(+) (rarA) [Streptomyces sp. GMY02]
MEPDLFTAAAEERQEKDPSSSPLAVRMRPRVLDEVVGQAHLLKPGSPLRRLVGEGGGGPAGPSSVILWGPPGTGKTTLAY
VVSKATNKRFVELSAITAGVKEVRAVIDGARRASGGFGKDTVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYF
SVISPLLSRSLLLTLEPLTDDDLRGLLRRALTEERGLGGSLTLPEDAEAHLLRIAGGDARRALTALEAAAGAALDKGERE
IALRTVEETVDRAAVNYDRQGDQHYDVASALIKSIRGSDVDAALHYLARMIDAGEDPRFIARRLMISASEDIGLADPTAL
PLAVAAAQAVALIGFPEAALTLSQATIALALAPKSNAATTAISAALEDVKKGLAGPVPAHLRDGHYKGAAKLGHAQGYVY
PHDVPGGIAAQQYAPEAVRGRRYYEPTRYGAEARYADVVDKVRERLRGDGT

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=506815 KQY30_RS30085 WP_217309648.1 7061775..7063130(+) (rarA) [Streptomyces sp. GMY02]
GTGGAGCCCGACCTCTTTACCGCAGCCGCGGAAGAACGCCAGGAGAAGGATCCGTCCAGCAGCCCCCTGGCCGTCCGGAT
GCGCCCCCGCGTCCTCGACGAAGTCGTCGGCCAGGCACATCTGCTGAAGCCGGGATCACCGCTGCGCCGACTGGTCGGAG
AGGGCGGCGGCGGCCCCGCCGGACCCTCGTCCGTGATTCTCTGGGGCCCGCCCGGCACCGGCAAGACGACCCTCGCGTAT
GTCGTCTCCAAGGCGACCAACAAGCGCTTCGTCGAGCTGTCCGCGATCACCGCGGGCGTCAAGGAGGTACGGGCGGTCAT
CGACGGCGCCCGCCGCGCCTCCGGTGGCTTCGGCAAGGACACCGTCCTCTTCCTCGACGAGATCCACCGCTTCAGCAAGG
CCCAGCAGGACTCCCTGCTGCCCGCCGTGGAGAACCGCTGGGTCACGCTGATCGCCGCCACCACCGAGAATCCGTACTTC
TCGGTGATCTCCCCGCTGCTCTCCCGCTCCCTGCTGCTCACCCTGGAGCCGCTCACCGACGACGATCTGCGCGGGCTGCT
GCGGCGGGCGCTGACCGAGGAGCGCGGACTCGGCGGCAGCCTCACCCTGCCCGAGGACGCCGAGGCGCATCTCCTGCGGA
TCGCCGGAGGCGACGCCCGCCGCGCGCTGACCGCGCTGGAGGCGGCCGCCGGCGCCGCGCTCGACAAGGGCGAGCGCGAG
ATCGCCCTGCGCACGGTCGAGGAGACGGTCGACCGGGCGGCGGTGAACTACGACCGCCAGGGCGACCAGCACTACGACGT
GGCGAGCGCGCTCATCAAGTCGATCCGCGGCTCCGACGTGGACGCGGCGCTGCACTATCTGGCCCGGATGATCGACGCGG
GGGAGGACCCCCGGTTCATCGCCCGGCGGCTGATGATCTCGGCCAGTGAGGACATCGGTCTCGCGGACCCGACGGCGCTG
CCGCTCGCGGTCGCCGCCGCCCAGGCCGTCGCCCTGATCGGCTTCCCCGAGGCCGCCCTCACCCTGAGCCAGGCCACCAT
CGCCCTGGCGCTCGCCCCCAAGTCGAACGCGGCGACGACGGCGATCTCGGCGGCGCTGGAGGACGTGAAGAAGGGGCTCG
CGGGCCCGGTCCCGGCCCATCTGCGCGACGGGCACTACAAGGGCGCGGCCAAGCTCGGGCATGCCCAGGGCTATGTCTAT
CCGCACGACGTGCCGGGCGGTATCGCCGCTCAGCAGTACGCGCCGGAGGCCGTGCGAGGCAGGCGCTACTACGAGCCCAC
GCGGTACGGCGCGGAGGCACGGTACGCGGACGTGGTCGACAAGGTGCGCGAGCGGCTGCGCGGCGACGGCACCTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(277-442)

ATPase family associated with various cellular activities (AAA) (AAA)

(65-169)

AAA C-terminal domain (AAA_assoc_2)

(200-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

43.59

95.122

0.415