Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   KQY30_RS00935 Genome accession   NZ_CP077658
Coordinates   231950..232804 (+) Length   284 a.a.
NCBI ID   WP_217305100.1    Uniprot ID   -
Organism   Streptomyces sp. GMY02     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 226950..237804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQY30_RS00920 (KQY30_00920) - 228405..230027 (+) 1623 WP_217305098.1 ABC transporter substrate-binding protein -
  KQY30_RS00925 (KQY30_00925) - 230031..230960 (+) 930 WP_046505504.1 ABC transporter permease -
  KQY30_RS00930 (KQY30_00930) - 230963..231946 (+) 984 WP_217305099.1 ABC transporter permease -
  KQY30_RS00935 (KQY30_00935) amiE 231950..232804 (+) 855 WP_217305100.1 ABC transporter ATP-binding protein Regulator
  KQY30_RS00940 (KQY30_00940) - 232873..233709 (+) 837 WP_217305101.1 ABC transporter ATP-binding protein -
  KQY30_RS00945 (KQY30_00945) - 233706..234686 (+) 981 WP_217305102.1 aldo/keto reductase -
  KQY30_RS00950 (KQY30_00950) - 234918..235715 (+) 798 WP_217305103.1 HpcH/HpaI aldolase/citrate lyase family protein -
  KQY30_RS00955 (KQY30_00955) - 235712..236971 (+) 1260 WP_217305104.1 exo-alpha-sialidase -
  KQY30_RS00960 (KQY30_00960) - 237173..237625 (+) 453 WP_254406860.1 lamin tail domain-containing protein -

Sequence

Protein


Download         Length: 284 a.a.        Molecular weight: 30263.94 Da        Isoelectric Point: 5.9688

>NTDB_id=506751 KQY30_RS00935 WP_217305100.1 231950..232804(+) (amiE) [Streptomyces sp. GMY02]
MATDVSPLDGVPLLDVENLQIELITSHGVIRAVDGVSFTVREGETVTLIGESGSGKSTTAMGVLRLLPEGLAVLSGSVRI
AGRDVVADPRAARALRGRTVSLIPQDPMTALSPVHTIGRQLGDALRLRHPGLSRAETREKGTELLAQVRIPRPETRWKAY
PHQFSGGMLQRILIAVALAAEPRLLIADEPTSALDATVQAGVLDLLMELQEVEGIGMLMITHDLGVARVVSDRIHVMKEG
RFVESGPAGTIVDRPAEPYTRALLAAVPRLGAWDEDGLTGAVAR

Nucleotide


Download         Length: 855 bp        

>NTDB_id=506751 KQY30_RS00935 WP_217305100.1 231950..232804(+) (amiE) [Streptomyces sp. GMY02]
ATGGCCACGGACGTGTCGCCGCTGGACGGCGTTCCGCTGCTGGATGTCGAGAACCTCCAGATCGAGCTGATCACCTCGCA
TGGAGTGATCCGCGCCGTCGACGGGGTGAGCTTCACGGTGCGCGAGGGCGAGACCGTGACGCTCATCGGCGAGTCGGGCT
CCGGCAAGTCGACCACCGCGATGGGCGTGCTGCGGCTGCTGCCGGAGGGGCTCGCGGTGCTGTCGGGGTCGGTACGGATC
GCGGGGCGGGATGTCGTCGCCGATCCGCGCGCCGCCCGGGCGCTGCGGGGGCGGACGGTGTCGCTGATCCCGCAGGACCC
GATGACGGCCCTCAGTCCGGTGCACACCATCGGCCGTCAGCTCGGGGACGCGCTGCGGCTGCGGCATCCGGGGCTGTCCC
GCGCCGAGACGAGGGAGAAGGGTACGGAACTGCTGGCCCAGGTCCGCATCCCCCGGCCGGAGACCCGCTGGAAGGCGTAT
CCGCACCAGTTCTCCGGCGGGATGCTGCAACGCATCCTGATCGCCGTGGCGCTGGCGGCCGAACCACGGCTGCTGATCGC
CGACGAACCGACATCCGCGCTGGACGCGACGGTGCAGGCGGGTGTCCTCGATCTGCTGATGGAGCTACAGGAAGTGGAGG
GGATCGGGATGCTGATGATCACCCACGATCTGGGGGTGGCCCGGGTCGTCTCCGACCGTATTCATGTGATGAAGGAGGGC
CGTTTCGTGGAATCGGGCCCCGCCGGCACGATCGTGGACCGGCCGGCCGAACCGTACACCCGCGCTCTGCTGGCGGCGGT
CCCGCGTCTGGGCGCCTGGGACGAGGACGGCCTGACCGGGGCGGTGGCCCGATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(34-192)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(243-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

40.075

94.014

0.377
  amiE Streptococcus thermophilus LMD-9

40.075

94.014

0.377
  amiE Streptococcus salivarius strain HSISS4

40.23

91.901

0.37