Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   KRR37_RS08725 Genome accession   NZ_CP077652
Coordinates   1949883..1951616 (+) Length   577 a.a.
NCBI ID   WP_248870090.1    Uniprot ID   -
Organism   Streptomyces sp. HNA39     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1944883..1956616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KRR37_RS08695 (KRR37_08655) - 1945906..1946907 (+) 1002 WP_127465723.1 TIGR00341 family protein -
  KRR37_RS08715 (KRR37_08675) - 1947941..1948249 (+) 309 WP_248870087.1 YtxH domain-containing protein -
  KRR37_RS08720 (KRR37_08680) - 1948302..1949747 (+) 1446 WP_248870088.1 FGGY family carbohydrate kinase -
  KRR37_RS08725 (KRR37_08685) rcrP 1949883..1951616 (+) 1734 WP_248870090.1 ABC transporter ATP-binding protein Regulator
  KRR37_RS08730 (KRR37_08690) - 1951616..1953544 (+) 1929 WP_128838578.1 ABC transporter ATP-binding protein -
  KRR37_RS08735 (KRR37_08695) - 1953571..1954767 (-) 1197 WP_348650850.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62482.64 Da        Isoelectric Point: 5.2709

>NTDB_id=506700 KRR37_RS08725 WP_248870090.1 1949883..1951616(+) (rcrP) [Streptomyces sp. HNA39]
MLIKLLRARLGPYKKPIALLVLLQLLQTCATLYLPSLNADIIDNGVVKGDTGYILEFGGLMIAVSVLQVLCNVGAVFYGA
RTASALGRDVRAAVFDRVQSFSARELGRFGAPSLITRTTNDVQQVQMLVLMAFTLMVSAPIMCVGGIIMALGQDVPLSAV
LLAVVPVLGISVSIIVAKMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDGYEEERFRGANTELTDVSVATGRLMAL
MFPTVMTVVNLSSVAVVWFGAHRIDSGGMQIGALTAFLAYLMQIVMAVMMATFMFMMVPRAEVCAERIEEVLGTDSSVVP
PVSHVTELRRHGELEVRGAEFRYPGAEEPVLRAVDLVARPGETTAIIGSTGSGKSTLLGLVPRLFDVTDGEVLVDGEDVR
TLDPVLLAKTVGLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKEFVERLEHGLEAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALARETAAATVVIVAQRVSTIRDADRILVLDEGRVVGSGTHHELMAGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=506700 KRR37_RS08725 WP_248870090.1 1949883..1951616(+) (rcrP) [Streptomyces sp. HNA39]
GTGCTCATAAAACTCCTGCGGGCCCGTCTGGGCCCGTACAAGAAACCCATCGCGCTGCTGGTCCTCCTCCAGCTGCTCCA
GACCTGCGCCACCCTGTATCTGCCCAGTCTGAACGCGGACATCATTGACAACGGTGTCGTCAAGGGCGATACCGGCTACA
TCCTGGAGTTCGGCGGCCTCATGATCGCCGTCAGCGTGCTCCAGGTCCTCTGCAACGTGGGGGCCGTCTTCTACGGGGCC
CGGACCGCGTCCGCGCTGGGGCGGGACGTGCGGGCGGCGGTCTTCGACCGGGTGCAGTCGTTCTCGGCCCGGGAGCTGGG
GCGGTTCGGGGCTCCCTCGCTGATCACGCGGACCACCAATGACGTCCAGCAGGTCCAGATGCTGGTGCTGATGGCGTTCA
CGCTGATGGTGTCGGCGCCGATCATGTGTGTCGGCGGCATCATCATGGCGCTCGGACAGGACGTGCCGCTCTCGGCCGTG
CTGCTGGCGGTGGTGCCGGTGCTCGGGATCTCGGTGAGCATCATCGTGGCGAAGATGCGGCCGCTGTTCCGGACGATGCA
GGAGCGGCTGGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGGAACCGGGTGATCCGGGCGTTCGTCCGCGACG
GTTACGAGGAGGAGCGGTTCCGGGGGGCCAACACCGAGCTGACCGATGTGTCGGTGGCGACCGGGCGGCTGATGGCGCTG
ATGTTCCCGACCGTCATGACGGTGGTCAACCTGTCGTCCGTCGCGGTGGTCTGGTTCGGTGCGCACCGCATCGACAGCGG
CGGGATGCAGATCGGTGCGCTGACCGCGTTCCTCGCGTATCTGATGCAGATCGTGATGGCGGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGCGCCGAGCGCATCGAGGAGGTGCTCGGCACCGATTCGAGCGTCGTGCCG
CCGGTCTCGCACGTGACCGAGCTGCGCCGGCACGGGGAGCTGGAGGTGCGCGGTGCGGAGTTCCGCTACCCGGGCGCCGA
GGAGCCGGTGCTGCGGGCCGTCGATCTGGTGGCGCGCCCCGGCGAGACCACGGCGATCATCGGGTCGACGGGGAGCGGGA
AGTCCACGCTGCTCGGTCTCGTACCCCGGCTGTTCGATGTGACGGACGGCGAGGTGCTGGTCGACGGCGAGGACGTGCGG
ACGCTGGATCCGGTGCTGCTGGCGAAGACGGTGGGCCTGGTGCCGCAGAAGCCGTACCTCTTCTCGGGGACGGTCGCGAC
GAACCTGCGGTACGGGAATCCGGACGCCACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGAGTTCG
TGGAAAGGCTGGAACACGGGCTGGAGGCGCCGATCGCGCAGGGCGGCACCAATGTGTCGGGCGGTCAGCGGCAGCGGCTC
GCCATCGCGCGGACGCTGGTGCAGCGGCCGGAGATCTATCTCTTCGACGACTCGTTCTCGGCGCTGGACTACGCGACCGA
CGCGGCGCTGCGGGCGGCGCTGGCCCGGGAGACGGCCGCGGCGACCGTGGTGATCGTGGCGCAGCGGGTCTCCACCATCC
GTGACGCCGACCGGATCCTGGTGCTGGACGAGGGGCGGGTCGTGGGCAGCGGTACCCATCACGAGCTGATGGCCGGCAAT
GAGACGTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.823

100

0.412