Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   I2437_RS05700 Genome accession   NZ_CP065061
Coordinates   1179895..1180773 (-) Length   292 a.a.
NCBI ID   WP_165627516.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ33     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1174895..1185773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2437_RS05685 (IEMOCGPF_01138) pheT 1175349..1177754 (-) 2406 WP_206153138.1 phenylalanine--tRNA ligase subunit beta -
  I2437_RS05690 (IEMOCGPF_01139) pheS 1177944..1178987 (-) 1044 WP_021320646.1 phenylalanine--tRNA ligase subunit alpha -
  I2437_RS05695 - 1179723..1179881 (-) 159 WP_165619235.1 hypothetical protein -
  I2437_RS05700 (IEMOCGPF_01140) endA 1179895..1180773 (-) 879 WP_165627516.1 DNA/RNA non-specific endonuclease Machinery gene
  I2437_RS05705 (IEMOCGPF_01141) - 1180805..1180993 (-) 189 WP_165627517.1 DNA-directed RNA polymerase subunit beta -
  I2437_RS05710 (IEMOCGPF_01142) murA 1180997..1182268 (-) 1272 WP_043052969.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  I2437_RS05715 (IEMOCGPF_01143) - 1182332..1182568 (-) 237 WP_012678109.1 DUF1146 family protein -
  I2437_RS05720 (IEMOCGPF_01144) - 1182702..1183118 (-) 417 WP_012678110.1 F0F1 ATP synthase subunit epsilon -
  I2437_RS05725 (IEMOCGPF_01145) atpD 1183131..1184537 (-) 1407 WP_012515432.1 F0F1 ATP synthase subunit beta -
  I2437_RS05730 (IEMOCGPF_01146) - 1184705..1185580 (-) 876 WP_012515431.1 F0F1 ATP synthase subunit gamma -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 31950.06 Da        Isoelectric Point: 10.2448

>NTDB_id=506609 I2437_RS05700 WP_165627516.1 1179895..1180773(-) (endA) [Streptococcus equi subsp. zooepidemicus strain SEZ33]
MIKKKKDIRLLNAFLALLLVLGTGYLAGHDDLAADNPIKQVYQRILGSDTQQAWLPKASRDWDTPSKALADSVMTATIKQ
QLGDVITWNGTGAYIINHNKTTLNAKVASLPYANNKTKLVQGQSVPTVANALLTKSTRQYQKRNDTGNGYSSWKPAGWHQ
VQGLKGRYSHAVDRGHLLGYALVGGLKGFDASMANPSNIATQTAWANQAANERSTGQNYYETKIRRALDSNKRVRYRVTL
LYEGNNLLASGSHLEAKSSDGSLEFNVFIPNVQAGLQIDYQTGQITVASSQP

Nucleotide


Download         Length: 879 bp        

>NTDB_id=506609 I2437_RS05700 WP_165627516.1 1179895..1180773(-) (endA) [Streptococcus equi subsp. zooepidemicus strain SEZ33]
ATGATCAAAAAGAAGAAAGACATTAGGCTGCTTAATGCCTTTTTAGCGCTCTTGCTTGTTCTTGGAACAGGTTATTTGGC
AGGACATGATGACCTAGCAGCTGATAACCCGATCAAGCAGGTCTACCAAAGGATTCTTGGCTCTGACACGCAGCAAGCCT
GGCTACCAAAGGCAAGCAGAGACTGGGACACTCCCTCCAAGGCCTTGGCAGATTCGGTCATGACAGCCACCATCAAACAG
CAATTAGGTGATGTGATTACTTGGAATGGCACTGGTGCCTATATCATTAACCATAATAAAACGACGCTAAATGCAAAGGT
AGCCAGTCTCCCCTACGCCAATAATAAAACAAAGCTGGTACAAGGGCAAAGTGTTCCTACCGTAGCCAATGCCCTGCTAA
CCAAGTCAACCCGACAATATCAGAAGCGAAATGACACTGGAAATGGCTATAGCTCATGGAAGCCTGCTGGCTGGCATCAG
GTTCAGGGGTTAAAGGGAAGGTACAGTCACGCAGTGGATAGAGGGCATCTTCTAGGCTATGCGCTTGTTGGCGGGCTAAA
AGGCTTTGATGCCTCAATGGCTAATCCCAGCAATATTGCTACTCAAACCGCATGGGCTAACCAAGCAGCCAACGAGAGAT
CAACCGGACAAAACTATTATGAAACAAAAATTCGCAGAGCTCTAGATAGCAATAAGCGTGTCCGCTATCGTGTAACTTTG
CTTTATGAGGGAAATAATCTCTTAGCAAGCGGCAGTCATCTTGAGGCAAAGTCATCAGATGGTAGCTTAGAATTTAACGT
CTTTATCCCTAATGTACAGGCTGGATTACAGATTGATTATCAAACAGGTCAGATCACTGTAGCTTCTTCCCAGCCTTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(116-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

67.257

77.397

0.521
  endA Streptococcus pneumoniae D39

67.257

77.397

0.521
  endA Streptococcus pneumoniae R6

67.257

77.397

0.521
  endA Streptococcus pneumoniae TIGR4

67.257

77.397

0.521