Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   KTN06_RS13270 Genome accession   NZ_CP077646
Coordinates   2797354..2798118 (-) Length   254 a.a.
NCBI ID   WP_001136236.1    Uniprot ID   A7ZT17
Organism   Escherichia coli strain ST866     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2792354..2803118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KTN06_RS13245 (KTN06_13240) yhhJ 2794210..2795334 (+) 1125 WP_045171765.1 ABC transporter permease -
  KTN06_RS13250 (KTN06_13245) - 2795438..2795668 (+) 231 WP_042014162.1 type II toxin-antitoxin system HicA family toxin -
  KTN06_RS13255 (KTN06_13250) - 2795665..2796024 (+) 360 WP_000593555.1 type II toxin-antitoxin system HicB family antitoxin -
  KTN06_RS13260 (KTN06_13255) nikR 2796144..2796545 (-) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  KTN06_RS13265 (KTN06_13260) nikE 2796551..2797357 (-) 807 WP_000173666.1 nickel import ATP-binding protein NikE -
  KTN06_RS13270 (KTN06_13265) amiE 2797354..2798118 (-) 765 WP_001136236.1 nickel import ATP-binding protein NikD Regulator
  KTN06_RS13275 (KTN06_13270) nikC 2798118..2798951 (-) 834 WP_001008963.1 nickel ABC transporter permease subunit NikC -
  KTN06_RS13280 (KTN06_13275) nikB 2798948..2799892 (-) 945 WP_000947068.1 nickel ABC transporter permease subunit NikB -
  KTN06_RS13285 (KTN06_13280) nikA 2799892..2801466 (-) 1575 WP_217609269.1 nickel ABC transporter substrate-binding protein -
  KTN06_RS13290 (KTN06_13285) acpT 2801577..2802164 (-) 588 WP_000285784.1 4'-phosphopantetheinyl transferase AcpT -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26833.42 Da        Isoelectric Point: 6.5992

>NTDB_id=506576 KTN06_RS13270 WP_001136236.1 2797354..2798118(-) (amiE) [Escherichia coli strain ST866]
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSQGKIVEQGDVETLFNAPKHTVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=506576 KTN06_RS13270 WP_001136236.1 2797354..2798118(-) (amiE) [Escherichia coli strain ST866]
ATGCCGCAACAGATTGAACTACGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTACACGGTGTATCGTTAACCCTGCA
ACGCGGGCGCGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCATTAACCTGCGCCGCGACGCTGGGCATTTTGC
CCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAACCTGCCT
GGCGTTAGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGC
TGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCG
TTTATCATCGCCGATGAACCGACCACCGACCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCGCCGGGAATGCTGCTGGTCACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGA
TGTCACAAGGTAAAATTGTCGAACAGGGCGATGTAGAAACGCTGTTTAACGCCCCCAAACATACGGTGACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZT17

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398