Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   I2436_RS04040 Genome accession   NZ_CP065060
Coordinates   854141..855019 (+) Length   292 a.a.
NCBI ID   WP_206153134.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ28     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 849141..860019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2436_RS04010 (GDAKBCAL_00799) - 849334..850209 (+) 876 WP_042670501.1 F0F1 ATP synthase subunit gamma -
  I2436_RS04015 (GDAKBCAL_00800) atpD 850377..851783 (+) 1407 WP_021320644.1 F0F1 ATP synthase subunit beta -
  I2436_RS04020 (GDAKBCAL_00801) - 851796..852212 (+) 417 WP_012678110.1 F0F1 ATP synthase subunit epsilon -
  I2436_RS04025 (GDAKBCAL_00802) - 852346..852582 (+) 237 WP_012678109.1 DUF1146 family protein -
  I2436_RS04030 (GDAKBCAL_00803) murA 852646..853917 (+) 1272 WP_206153132.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  I2436_RS04035 (GDAKBCAL_00804) - 853921..854109 (+) 189 WP_041785421.1 DNA-directed RNA polymerase subunit beta -
  I2436_RS04040 (GDAKBCAL_00805) endA 854141..855019 (+) 879 WP_206153134.1 DNA/RNA non-specific endonuclease Machinery gene
  I2436_RS04045 - 855033..855191 (+) 159 WP_206153136.1 hypothetical protein -
  I2436_RS04050 (GDAKBCAL_00806) pheS 855928..856971 (+) 1044 WP_012678105.1 phenylalanine--tRNA ligase subunit alpha -
  I2436_RS04055 (GDAKBCAL_00807) pheT 857161..859566 (+) 2406 WP_206153138.1 phenylalanine--tRNA ligase subunit beta -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 31878.99 Da        Isoelectric Point: 10.1657

>NTDB_id=506541 I2436_RS04040 WP_206153134.1 854141..855019(+) (endA) [Streptococcus equi subsp. zooepidemicus strain SEZ28]
MIKKKKDIRLLNAFLALLLVLGTGYLAGHDDLAADNPIKQVYQRILGSDPQQAGLPKASRDWDTPSKALADSVMTATIKQ
QLGDVITWNGTGAYIINHNKTTLNAKVASLPYANNKTKMVQGQSVPTVANALLTKSTRQYQKRNDTGNGYSSWKPAGWHQ
VQELKGRYSHAVDRGHLLGYALVGGLKGFDASMANPSNIATQTAWANQAANERSTGQNYYETKIRKALDSNKRVRYRVTL
LYEGNNLLASGSHLEAKSSDGSLEFNVFIPNVQAGLQIDYQTGQITVASSQP

Nucleotide


Download         Length: 879 bp        

>NTDB_id=506541 I2436_RS04040 WP_206153134.1 854141..855019(+) (endA) [Streptococcus equi subsp. zooepidemicus strain SEZ28]
ATGATCAAAAAGAAGAAAGACATTAGGCTGCTTAATGCCTTTTTAGCGCTCTTGCTTGTTCTTGGAACAGGTTATTTGGC
AGGACATGATGACCTAGCAGCTGATAACCCGATCAAGCAGGTCTACCAAAGGATTCTTGGCTCTGACCCGCAGCAAGCCG
GGCTACCAAAGGCAAGCCGAGACTGGGACACTCCCTCCAAGGCCTTGGCAGATTCGGTCATGACAGCCACCATCAAACAG
CAATTAGGTGATGTGATTACTTGGAATGGCACCGGTGCCTATATCATTAACCATAATAAAACGACGCTAAATGCAAAGGT
AGCTAGTCTCCCCTATGCCAATAATAAAACAAAGATGGTACAAGGGCAAAGCGTTCCTACCGTAGCCAATGCCCTGCTAA
CCAAGTCAACCCGACAATATCAGAAGCGCAATGACACTGGAAATGGCTATAGCTCATGGAAGCCTGCTGGCTGGCATCAG
GTTCAGGAGTTAAAGGGAAGGTATAGTCACGCAGTGGATAGAGGGCATCTTCTAGGCTATGCGCTTGTTGGCGGGCTAAA
AGGCTTTGATGCCTCAATGGCTAATCCTAGTAATATCGCTACTCAAACCGCATGGGCTAACCAAGCAGCTAACGAGAGAT
CAACCGGACAAAACTATTATGAAACAAAAATTCGCAAAGCCCTAGATAGCAATAAGCGTGTCCGCTATCGTGTAACTTTG
CTTTATGAGGGAAATAATCTCTTAGCAAGCGGCAGTCATCTTGAGGCAAAGTCATCAGATGGTAGCTTAGAATTTAACGT
CTTTATCCCTAATGTACAGGCTGGATTACAGATTGATTATCAAACAGGTCAGATCACTGTAGCTTCTTCCCAGCCTTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(97-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

67.699

77.397

0.524
  endA Streptococcus pneumoniae D39

67.699

77.397

0.524
  endA Streptococcus pneumoniae R6

67.699

77.397

0.524
  endA Streptococcus pneumoniae TIGR4

67.699

77.397

0.524