Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   I2435_RS06270 Genome accession   NZ_CP065059
Coordinates   1262608..1263486 (-) Length   292 a.a.
NCBI ID   WP_206156305.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ25     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1257608..1268486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2435_RS06255 (JFMEOBDD_01261) pheT 1258061..1260466 (-) 2406 WP_206156304.1 phenylalanine--tRNA ligase subunit beta -
  I2435_RS06260 (JFMEOBDD_01262) pheS 1260656..1261699 (-) 1044 WP_012678105.1 phenylalanine--tRNA ligase subunit alpha -
  I2435_RS06265 - 1262436..1262594 (-) 159 WP_014622728.1 hypothetical protein -
  I2435_RS06270 (JFMEOBDD_01263) endA 1262608..1263486 (-) 879 WP_206156305.1 DNA/RNA non-specific endonuclease Machinery gene
  I2435_RS06275 (JFMEOBDD_01264) - 1263518..1263706 (-) 189 WP_012678107.1 DNA-directed RNA polymerase subunit beta -
  I2435_RS06280 (JFMEOBDD_01265) murA 1263710..1264981 (-) 1272 WP_206156306.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  I2435_RS06285 (JFMEOBDD_01266) - 1265045..1265281 (-) 237 WP_012678109.1 DUF1146 family protein -
  I2435_RS06290 (JFMEOBDD_01267) - 1265415..1265831 (-) 417 WP_012515433.1 F0F1 ATP synthase subunit epsilon -
  I2435_RS06295 (JFMEOBDD_01268) atpD 1265844..1267250 (-) 1407 WP_021320644.1 F0F1 ATP synthase subunit beta -
  I2435_RS06300 (JFMEOBDD_01269) - 1267418..1268293 (-) 876 WP_012678111.1 F0F1 ATP synthase subunit gamma -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 31913.01 Da        Isoelectric Point: 10.1657

>NTDB_id=506495 I2435_RS06270 WP_206156305.1 1262608..1263486(-) (endA) [Streptococcus equi subsp. zooepidemicus strain SEZ25]
MIKKKKDIRLLNAFLALLLVLGTGYLAGHDDLAADNPIKQVYQRIFGSDPQQAGLPKASRDWDTPSKALADSVMTATIKQ
QLGDVITWNGTGAYIINHNKTTLNAKVASLPYANNKTKMVQGQSVPTVANALLTKSTRQYQKRNDTGNGYSSWKPAGWHQ
VQELKGRYSHAVDRGHLLGYALVGGLKGFDASMANPSNIATQTAWANQAANERSTGQNYYETKIRKALDSNKRVRYRVTL
LYEGNNLLASGSHLEAKSSDGSLEFNVFIPNVQAGLQIDYQTGQITVASSQP

Nucleotide


Download         Length: 879 bp        

>NTDB_id=506495 I2435_RS06270 WP_206156305.1 1262608..1263486(-) (endA) [Streptococcus equi subsp. zooepidemicus strain SEZ25]
ATGATCAAAAAGAAGAAAGACATTAGGCTGCTTAATGCCTTTTTAGCGCTGTTGCTTGTTCTTGGAACAGGTTATTTGGC
AGGACATGATGACCTAGCAGCTGATAATCCGATCAAGCAGGTCTACCAAAGGATTTTTGGCTCTGACCCGCAGCAAGCCG
GGCTACCAAAGGCAAGCCGAGACTGGGACACTCCCTCCAAGGCCTTGGCAGATTCGGTCATGACAGCCACCATCAAACAG
CAATTAGGTGATGTGATTACTTGGAATGGCACTGGTGCCTATATCATTAACCATAATAAAACGACGCTAAATGCAAAGGT
AGCTAGTCTCCCCTATGCCAATAATAAAACAAAGATGGTACAAGGGCAAAGCGTTCCTACCGTAGCCAATGCCCTGCTAA
CCAAGTCAACCCGACAATATCAGAAGCGCAATGACACTGGAAATGGCTATAGCTCATGGAAGCCTGCTGGCTGGCATCAG
GTTCAGGAGTTAAAGGGAAGGTATAGTCACGCAGTGGATAGAGGGCATCTTCTAGGCTATGCGCTTGTTGGCGGGCTAAA
AGGCTTTGATGCCTCAATGGCTAATCCTAGTAATATCGCTACTCAAACCGCATGGGCTAACCAAGCAGCTAACGAGAGAT
CAACCGGACAAAACTATTATGAAACAAAAATTCGCAAAGCCCTAGATAGCAATAAGCGTGTCCGCTATCGTGTAACTTTG
CTTTATGAGGGAAATAATCTCTTAGCAAGCGGCAGTCATCTTGAGGCAAAGTCATCAGATGGTAGCTTAGAATTTAACGT
CTTTATCCCTAATGTACAGGCTGGATTACAGATTGATTATCAAACAGGTCAGATCACTGTAGCTTCTTCCCAGCCTTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(97-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

67.699

77.397

0.524
  endA Streptococcus pneumoniae D39

67.699

77.397

0.524
  endA Streptococcus pneumoniae R6

67.699

77.397

0.524
  endA Streptococcus pneumoniae TIGR4

67.699

77.397

0.524