Detailed information    

insolico Bioinformatically predicted

Overview


Name   uvrA   Type   Machinery gene
Locus tag   KTN75_RS01935 Genome accession   NZ_CP077635
Coordinates   357692..360517 (-) Length   941 a.a.
NCBI ID   WP_002875282.1    Uniprot ID   -
Organism   Campylobacter jejuni strain R19.1007     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 352692..365517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KTN75_RS01920 (KTN75_01920) - 354923..356283 (+) 1361 Protein_381 MFS transporter -
  KTN75_RS01925 (KTN75_01925) - 356280..357288 (+) 1009 Protein_382 nucleoside hydrolase -
  KTN75_RS01930 (KTN75_01930) - 357244..357687 (-) 444 WP_002868165.1 YqaA family protein -
  KTN75_RS01935 (KTN75_01935) uvrA 357692..360517 (-) 2826 WP_002875282.1 excinuclease ABC subunit UvrA Machinery gene
  KTN75_RS01940 (KTN75_01940) - 360590..361375 (-) 786 WP_002934922.1 sulfite exporter TauE/SafE family protein -
  KTN75_RS01945 (KTN75_01945) - 361498..361587 (+) 90 WP_042635777.1 hypothetical protein -
  KTN75_RS01950 (KTN75_01950) trpE 361790..363040 (+) 1251 WP_002858746.1 anthranilate synthase component I family protein -
  KTN75_RS01955 (KTN75_01955) trpD 363037..364638 (+) 1602 WP_002934923.1 anthranilate phosphoribosyltransferase -
  KTN75_RS01960 (KTN75_01960) trpF 364625..365224 (+) 600 WP_217295972.1 phosphoribosylanthranilate isomerase -

Sequence


Protein


Download         Length: 941 a.a.        Molecular weight: 105676.06 Da        Isoelectric Point: 8.6232

>NTDB_id=506495 KTN75_RS01935 WP_002875282.1 357692..360517(-) (uvrA) [Campylobacter jejuni strain R19.1007]
MNDTIKIIGARENNLKNIHLEIPKNKLIVFTGLSGSGKSTLAFGTLYAEGQRRYIESLSAYARQFLDKVGKPDVDKIEGL
TPAIAIDQKTTSKNPRSTVGTITEIYDYLRLLYARVGIQHCHQCGQKISSMSVSDIVSEILKFPKGAKIIIYAPLIREKK
GTYADLLENLRNKGYVRAQIDGVLVRLDEEIELAKTKKHTIKLVIDRLEIQEDLLSRLASDIEKGLQESFGEIEIEVLNH
EEINLNKHYHFSEHSACFDCKISFVPLEPLSFSFNSPKGACEACDGLGIRYTLDMKKIIDENLSLENGAVKIMYGFNKSY
YYKFLIAFCEQNEIPIKIPFMQLNEEQKRLVLYGNAKTIEFLWKRNRLKRTFEGVVKMAYEMLKDEKDLAEYMSEKICKD
CGGHRLKPESLAVKVAKKSLGEILDMSIEDSTAFFADEKNFSYLSEQQKLISKPILKEINERLFFLYDVGLGYLSLGRDA
RTISGGEAQRIRIASQIGSGLSGVMYVLDEPSIGLHERDTAKLIKTLRNLQQKGNTLIVVEHDKMTIEEADFIVDIGPKA
GKFGGEVVFSGTYKELLKSKSETALYMNGKKQISQLQNRTQKEWLELKNVNINNIQDLSVKFPLQNLVAITGVSGSGKSS
LILQTLLPFAQEELNRAKKVKKLGGVQIEGLEKLDKVIYLDQSPIGRTPRSNPATYTGAMDEIRNLFAATKEAKMRGYKA
GRFSFNVKGGRCEKCSGDGEIKIEMHFLPDVMVVCDTCEGKRYNDATLEIKYKGKNISEILNMSVLEASEFFTAVPKIKQ
KLDTLVKVGLDYLTLGQNATTLSGGEAQRIKLAKELSRSDTGKTLYILDEPTTGLHFEDVNKLILVLQHLVDLKNSVFVI
EHNLDVIKNADYIIDMGPEGGVKGGKVISTGSVEKVAKEHKKTRSYTGYYLDLELKNTQKS

Nucleotide


Download         Length: 2826 bp        

>NTDB_id=506495 KTN75_RS01935 WP_002875282.1 357692..360517(-) (uvrA) [Campylobacter jejuni strain R19.1007]
ATGAACGATACCATAAAAATCATTGGCGCAAGAGAAAATAACCTAAAAAATATCCACCTTGAAATTCCCAAAAACAAACT
CATTGTTTTTACAGGACTGAGCGGAAGTGGAAAATCAACCCTTGCTTTTGGAACTCTTTATGCTGAAGGACAACGCCGTT
ATATAGAAAGTTTAAGTGCTTACGCCAGACAATTTTTAGATAAGGTAGGCAAACCTGATGTCGATAAAATCGAAGGTTTA
ACTCCAGCCATTGCCATAGATCAAAAAACTACTTCTAAAAATCCACGCTCTACTGTAGGAACCATCACTGAAATTTATGA
TTATCTAAGACTTTTATACGCAAGAGTTGGCATTCAACATTGTCATCAATGCGGACAAAAAATTTCATCTATGAGTGTAA
GTGATATAGTCAGTGAAATTTTAAAATTTCCAAAAGGTGCAAAAATCATCATCTACGCCCCACTCATACGAGAAAAAAAA
GGAACTTATGCAGATTTGCTTGAAAATTTACGCAACAAAGGCTATGTAAGAGCTCAAATTGATGGAGTTTTGGTAAGACT
TGATGAAGAAATTGAACTAGCCAAAACCAAAAAACACACCATTAAACTTGTCATAGATAGGCTTGAAATTCAAGAAGATT
TACTTTCTCGTCTTGCAAGCGATATAGAAAAAGGCTTACAAGAAAGCTTTGGAGAAATAGAAATAGAAGTTTTAAATCAT
GAGGAAATAAACCTTAATAAACACTATCATTTTAGCGAGCATTCAGCTTGTTTTGATTGTAAAATTTCCTTTGTTCCACT
CGAGCCTTTAAGCTTTTCTTTTAATTCTCCAAAAGGAGCATGTGAAGCTTGCGATGGACTTGGAATTCGTTATACTTTAG
ATATGAAAAAAATCATCGATGAAAATTTAAGTCTCGAAAACGGTGCTGTTAAAATCATGTATGGTTTTAATAAAAGTTAT
TATTATAAATTCCTAATCGCCTTTTGCGAACAAAATGAAATTCCTATCAAAATACCTTTTATGCAATTAAACGAAGAACA
AAAACGTCTTGTATTGTATGGTAATGCCAAAACTATAGAATTTCTTTGGAAAAGAAATCGCCTAAAACGCACTTTTGAAG
GCGTGGTTAAAATGGCTTATGAAATGCTAAAAGATGAAAAAGATTTAGCTGAATATATGAGTGAAAAAATTTGTAAAGAC
TGCGGTGGGCATCGTTTAAAACCCGAAAGTTTAGCCGTGAAAGTAGCCAAAAAAAGCTTGGGTGAAATTTTAGATATGAG
CATAGAAGATAGTACGGCTTTTTTTGCAGATGAGAAAAATTTTTCTTATTTAAGCGAGCAACAAAAACTTATTTCTAAAC
CTATCCTAAAAGAAATCAACGAAAGATTGTTTTTCTTGTATGATGTGGGGCTAGGTTATCTTTCTTTAGGGCGCGATGCA
AGAACGATTAGTGGGGGTGAAGCACAAAGAATCCGCATAGCTTCACAAATTGGCAGTGGTTTAAGCGGAGTGATGTATGT
CTTAGATGAGCCTAGCATAGGACTTCATGAAAGAGATACTGCAAAACTGATTAAAACTTTAAGAAATTTACAACAAAAGG
GCAATACCCTAATTGTCGTAGAGCATGATAAAATGACCATAGAAGAAGCAGATTTTATTGTAGATATTGGTCCAAAAGCA
GGAAAATTTGGGGGTGAGGTTGTATTTAGTGGAACTTATAAAGAACTTTTAAAAAGCAAAAGCGAAACTGCACTTTATAT
GAATGGTAAAAAACAAATTTCACAACTTCAAAACAGAACACAGAAAGAATGGCTTGAGCTTAAAAATGTAAATATTAACA
ATATCCAAGATTTAAGCGTAAAATTTCCTTTGCAAAATTTAGTCGCTATAACAGGAGTTTCAGGTTCTGGAAAAAGCTCT
TTGATACTTCAAACCCTACTTCCTTTTGCACAAGAGGAATTAAACCGTGCGAAAAAAGTTAAAAAACTTGGCGGAGTACA
AATAGAAGGACTTGAAAAACTTGATAAAGTCATTTATCTTGATCAAAGCCCAATTGGGCGCACACCACGTTCAAATCCTG
CCACCTATACAGGTGCTATGGATGAAATCAGAAATCTTTTTGCCGCCACTAAAGAAGCCAAAATGCGTGGTTATAAAGCT
GGACGCTTTTCTTTTAATGTCAAGGGTGGAAGATGTGAGAAATGTAGCGGAGATGGAGAAATCAAAATAGAAATGCATTT
TTTACCTGATGTTATGGTAGTTTGTGATACTTGCGAGGGCAAACGCTACAATGATGCCACGCTAGAAATCAAATATAAAG
GCAAAAATATCAGTGAAATTTTAAATATGAGTGTTTTAGAAGCGAGTGAATTTTTTACAGCCGTTCCTAAAATCAAACAA
AAATTAGATACTCTAGTAAAAGTGGGTTTAGATTATCTAACTCTAGGACAAAATGCCACCACCTTAAGTGGAGGTGAAGC
ACAAAGAATCAAACTTGCTAAAGAACTAAGCCGTAGCGATACAGGAAAAACGCTTTATATACTTGATGAACCTACAACAG
GACTGCATTTTGAAGATGTCAATAAACTCATCTTAGTTTTACAACATTTAGTTGATCTTAAAAATTCTGTTTTTGTGATA
GAACATAATTTAGATGTGATTAAAAATGCTGATTATATCATCGATATGGGGCCTGAAGGCGGAGTTAAAGGTGGAAAAGT
TATAAGCACAGGAAGCGTGGAAAAAGTCGCTAAAGAACACAAAAAAACCCGTTCTTACACAGGATATTATCTAGACTTAG
AGCTTAAAAATACACAAAAATCATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

52.156

100

0.527

  uvrA Streptococcus pneumoniae TIGR4

52.156

100

0.527

  uvrA Streptococcus pneumoniae D39

52.156

100

0.527