Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   I2435_RS00760 Genome accession   NZ_CP065059
Coordinates   127239..128192 (+) Length   317 a.a.
NCBI ID   WP_043024962.1    Uniprot ID   A0A7Z8ZY98
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ25     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 125812..127154 127239..128192 flank 85


Gene organization within MGE regions


Location: 125812..128192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2435_RS00755 - 125812..127154 (+) 1343 WP_206156533.1 IS3 family transposase -
  I2435_RS00760 (JFMEOBDD_00152) comYH 127239..128192 (+) 954 WP_043024962.1 class I SAM-dependent methyltransferase Machinery gene

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35708.69 Da        Isoelectric Point: 4.6973

>NTDB_id=506463 I2435_RS00760 WP_043024962.1 127239..128192(+) (comYH) [Streptococcus equi subsp. zooepidemicus strain SEZ25]
MNFEKIEQAYELILENSQLIENDLKTHIYDAIVEQNSFYLGAQGASPQVAKNIETLKALQLTKEEWRQAYQFVLIKAGKT
EPLQANHQFTPDAIGFIMLYILETLSSQESLDVLEIGSGTGNLAQTILNHSHKSIDYLGIELDDLLIDLSASIAEIMGSS
AQFIQEDAVRPQLLKESDMIISDLPVGFYPNDDIASRYQVASSDEHTYAHHLLIEQALKYLKKDGFAIFLAPVNLLSSPQ
SHLLKQWLKGYAQVAALITLPEAVFGNPANAKSIIVLCKQSNRFAETFVYPIRDLKSVDNVRDFMENFKNWKRDNVI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=506463 I2435_RS00760 WP_043024962.1 127239..128192(+) (comYH) [Streptococcus equi subsp. zooepidemicus strain SEZ25]
ATGAATTTTGAAAAGATTGAACAAGCCTATGAGCTTATATTAGAAAATAGCCAGCTGATTGAAAATGATTTAAAAACGCA
TATCTATGATGCTATTGTTGAGCAGAATTCTTTTTATCTGGGAGCCCAAGGAGCAAGCCCTCAGGTTGCTAAAAATATTG
AGACGTTGAAGGCCTTGCAGCTAACCAAGGAGGAGTGGCGTCAGGCTTACCAGTTTGTTTTGATCAAGGCTGGGAAAACA
GAGCCATTACAGGCCAACCACCAATTTACCCCAGACGCGATCGGTTTTATCATGCTTTATATTTTGGAGACCTTGAGTTC
ACAAGAGTCACTTGATGTGCTTGAGATTGGCAGTGGAACAGGTAATTTAGCTCAAACTATTTTAAACCACTCACATAAGA
GCATTGATTATTTAGGCATTGAGCTTGATGATTTATTAATTGATCTATCAGCTAGTATTGCTGAAATCATGGGGTCGTCA
GCCCAGTTTATTCAAGAGGATGCTGTCAGACCTCAGCTGTTAAAGGAAAGTGATATGATCATTAGTGATTTGCCAGTTGG
CTTTTATCCTAACGATGATATTGCCAGCAGGTATCAGGTAGCTAGCTCAGATGAGCATACCTATGCCCATCATTTACTGA
TAGAGCAGGCCTTAAAGTACCTGAAAAAAGATGGCTTTGCTATTTTCTTAGCACCGGTAAATCTTTTGAGCAGCCCACAA
AGTCACCTCTTAAAACAATGGCTGAAGGGCTATGCTCAGGTTGCGGCCTTGATTACTTTGCCTGAGGCAGTGTTTGGAAA
TCCAGCTAATGCAAAATCGATTATTGTTCTTTGTAAGCAATCGAATCGCTTTGCAGAAACCTTTGTTTACCCCATTAGGG
ATTTGAAATCTGTTGATAATGTTCGTGATTTTATGGAAAACTTCAAAAATTGGAAACGGGATAATGTTATTTAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(68-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z8ZY98

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

63.291

99.685

0.631
  comYH Streptococcus mutans UA140

63.291

99.685

0.631