Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   I2433_RS06275 Genome accession   NZ_CP065056
Coordinates   1283247..1284125 (-) Length   292 a.a.
NCBI ID   WP_206151942.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ14     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1278247..1289125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2433_RS06265 (JDBNIEOD_01260) pheT 1278720..1281125 (-) 2406 WP_206151941.1 phenylalanine--tRNA ligase subunit beta -
  I2433_RS06270 (JDBNIEOD_01261) pheS 1281315..1282358 (-) 1044 WP_012678105.1 phenylalanine--tRNA ligase subunit alpha -
  I2433_RS06275 (JDBNIEOD_01262) endA 1283247..1284125 (-) 879 WP_206151942.1 DNA/RNA non-specific endonuclease Machinery gene
  I2433_RS06280 (JDBNIEOD_01263) - 1284157..1284345 (-) 189 WP_012678107.1 DNA-directed RNA polymerase subunit beta -
  I2433_RS06285 (JDBNIEOD_01264) murA 1284349..1285620 (-) 1272 WP_012678108.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  I2433_RS06290 (JDBNIEOD_01265) - 1285684..1285920 (-) 237 WP_012678109.1 DUF1146 family protein -
  I2433_RS06295 (JDBNIEOD_01266) - 1286054..1286470 (-) 417 WP_012515433.1 F0F1 ATP synthase subunit epsilon -
  I2433_RS06300 (JDBNIEOD_01267) atpD 1286483..1287889 (-) 1407 WP_206151943.1 F0F1 ATP synthase subunit beta -
  I2433_RS06305 (JDBNIEOD_01268) - 1288057..1288932 (-) 876 WP_012515431.1 F0F1 ATP synthase subunit gamma -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 32019.08 Da        Isoelectric Point: 10.2449

>NTDB_id=506376 I2433_RS06275 WP_206151942.1 1283247..1284125(-) (endA) [Streptococcus equi subsp. zooepidemicus strain SEZ14]
MIKKKKDIRLLNAFLAFLLVLGIGYLAGHDGLTNDNPIKQVYQRIFGSDPQQAESPKASRDWDTPSKALADSVMTAAIKQ
QLGDVITWNGTGAYIINHNKTTLNAKVASLPYANNKTKLVQGQSVPTVANALLTKSTRQYQKRNDTGNGYSSWKPAGWHQ
VQGLKGRYNHAVDRGHLLGYALVGGLKGFDASMANPSNIATQTVWANQAANERSTGQNYYETKIRRALDSNKRVRYRVTL
LYDGNNLLASGSHLEAKSSDGSLEFNVFIPNVQAGLQIDYQTGQITVAPSQH

Nucleotide


Download         Length: 879 bp        

>NTDB_id=506376 I2433_RS06275 WP_206151942.1 1283247..1284125(-) (endA) [Streptococcus equi subsp. zooepidemicus strain SEZ14]
ATGATCAAAAAGAAGAAAGACATTAGGCTGCTTAATGCCTTTTTAGCCTTTTTGCTGGTCCTAGGGATCGGCTACCTCGC
AGGACATGATGGCTTAACAAATGATAATCCGATCAAGCAGGTCTACCAAAGGATTTTTGGCTCTGACCCGCAGCAAGCCG
AGTCACCAAAGGCAAGCAGAGACTGGGACACTCCCTCCAAAGCCTTGGCGGATTCGGTCATGACAGCTGCCATCAAACAG
CAATTAGGTGATGTGATTACTTGGAATGGCACCGGTGCCTATATTATTAACCATAATAAAACAACGCTAAATGCAAAGGT
AGCCAGTCTGCCCTATGCCAATAATAAAACAAAACTGGTACAAGGGCAAAGTGTTCCTACCGTAGCCAACGCCCTGCTAA
CCAAGTCAACTCGACAGTATCAGAAGCGCAATGACACTGGAAATGGCTATAGCTCATGGAAGCCTGCTGGCTGGCATCAG
GTTCAAGGATTAAAGGGAAGATACAATCACGCAGTAGATAGAGGACACCTTCTGGGCTATGCACTTGTTGGCGGGCTAAA
GGGCTTTGATGCCTCAATGGCTAATCCCAGTAATATTGCTACTCAAACCGTATGGGCCAATCAAGCAGCCAACGAGCGAT
CAACCGGACAAAACTATTATGAAACAAAGATTCGCAGAGCCCTAGATAGCAACAAGCGTGTCCGCTATCGTGTAACCCTA
CTTTATGATGGAAATAACCTCTTAGCAAGCGGCAGTCACCTTGAGGCAAAGTCATCAGACGGTAGCTTAGAATTTAACGT
CTTTATCCCTAATGTACAGGCTGGATTGCAGATTGATTATCAAACAGGTCAGATCACTGTAGCCCCTTCACAGCATTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(116-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

67.257

77.397

0.521
  endA Streptococcus pneumoniae D39

67.257

77.397

0.521
  endA Streptococcus pneumoniae R6

67.257

77.397

0.521
  endA Streptococcus pneumoniae TIGR4

67.257

77.397

0.521