Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   MY9_RS13660 Genome accession   NC_017743
Coordinates   2686572..2688932 (-) Length   786 a.a.
NCBI ID   WP_014664811.1    Uniprot ID   -
Organism   Bacillus sp. JS     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2681572..2693932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MY9_RS13640 (MY9_2740) - 2681645..2683201 (+) 1557 WP_014664809.1 SH3 domain-containing protein -
  MY9_RS13645 (MY9_2741) dtd 2683228..2683668 (-) 441 WP_014664810.1 D-aminoacyl-tRNA deacylase -
  MY9_RS13650 (MY9_2742) relA 2683681..2685885 (-) 2205 WP_003229747.1 GTP diphosphokinase -
  MY9_RS13655 (MY9_2743) - 2686054..2686566 (-) 513 WP_014477521.1 adenine phosphoribosyltransferase -
  MY9_RS13660 (MY9_2744) recJ 2686572..2688932 (-) 2361 WP_014664811.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  MY9_RS13665 (MY9_2745) - 2688999..2689322 (-) 324 WP_014664812.1 lipopolysaccharide assembly LapA domain-containing protein -
  MY9_RS13670 (MY9_2746) - 2689397..2689894 (-) 498 WP_014664813.1 cation:proton antiporter regulatory subunit -
  MY9_RS13675 (MY9_2747) secDF 2690052..2692265 (-) 2214 WP_014664814.1 protein translocase subunit SecDF -
  MY9_RS13680 (MY9_2748) comN 2692304..2692600 (-) 297 WP_014664815.1 post-transcriptional regulator ComN -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 87955.57 Da        Isoelectric Point: 5.0895

>NTDB_id=50626 MY9_RS13660 WP_014664811.1 2686572..2688932(-) (recJ) [Bacillus sp. JS]
MLASKMRWEIQRPDQDKVKSLTEQLHITPLVASLLVKRGFDTAESARLFLHTKDADFYDPFEMKGMKEAADRIKQAISQQ
EQIMIYGDYDADGVTSTSVMLHTLQKLSAQVDFYIPDRFKEGYGPNEQAFRSIKERGFSLIITVDTGIAAVHEAKVAKEL
GLDVIITDHHEPGPELPDVHAIVHPKQPGCTYPFKELAGVGVAFKLAHALLGELPDELLDLAAIGTIADLVPLHDENRLI
ATLGLERLRRTNRLGLKELIKLSGGDIGEANEETVGFQLAPRLNAVGRIEQADPAVHLLMSEDSFEAEELAAEIDQLNKE
RQKMVSKMTDEAIEMVERQGLDQTAIVVAKAGWNPGVVGIVASKLVDRFYRPAIVLGIDEEKGIAKGSARSIRGFNLFES
LSECRDILPHFGGHPMAAGMTLKAEDVPNLRSRLNEIADNTLTEEDFVPVQEVDLVCSVEDITVESITEMNMLSPFGMLN
PKPHVLVENAVLEDVRKIGANKTHVKMTIKNESSQLDCVGFNKGELEEGIVPGSRISIVGEMSINEWNNRKKPQLMIKDA
AVSEWQLFDLRGKRTWEDTVSALPSAKRAIVSFKEDSTTLLKTEGLRQEVQVISSEDQAKAFDLDGAYIVLLDPPPSLDM
LARLLEGKAPERIYFIFLNHEDHFLSTFPARDHFKWYYAFLLKRGAFDVKKHGSELAKHKGWSVETINFMTKVFFDLGFV
KIENGVLSVVSGAKKRDLTDSQTYQAKQQLMELDQKLNYSSAEELKEWLNKLMKQDSEAYESTRRT

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=50626 MY9_RS13660 WP_014664811.1 2686572..2688932(-) (recJ) [Bacillus sp. JS]
ATGTTAGCGTCAAAAATGCGATGGGAAATCCAGCGACCAGATCAGGATAAGGTCAAATCACTCACAGAACAATTGCATAT
AACACCTCTTGTTGCGTCCCTGCTTGTAAAAAGAGGCTTTGATACGGCAGAAAGCGCTAGGCTGTTTTTACATACAAAGG
ATGCCGATTTTTATGATCCTTTTGAAATGAAAGGCATGAAAGAAGCGGCAGATCGAATAAAACAGGCGATTTCACAACAA
GAACAGATTATGATATATGGCGATTATGACGCCGATGGGGTTACCAGTACGTCAGTGATGCTTCACACGCTGCAAAAACT
ATCGGCTCAAGTTGATTTTTATATACCTGACCGTTTTAAAGAAGGATATGGACCTAATGAACAGGCGTTTCGTTCGATTA
AAGAACGGGGCTTCTCTTTGATCATTACGGTTGATACAGGAATTGCCGCTGTGCATGAAGCGAAGGTGGCGAAAGAACTC
GGGCTGGATGTCATTATTACAGATCATCATGAACCGGGACCGGAGCTTCCGGATGTCCATGCGATCGTCCACCCGAAGCA
GCCGGGCTGCACTTACCCGTTTAAAGAGCTTGCAGGGGTCGGAGTCGCGTTTAAGCTGGCCCATGCTTTATTGGGTGAAC
TTCCGGATGAACTGCTTGACCTGGCGGCAATCGGCACCATTGCTGACCTTGTCCCGCTGCATGACGAAAACAGATTAATT
GCAACACTAGGACTTGAAAGGCTCCGGCGGACAAACCGGCTCGGCTTAAAAGAACTGATTAAGCTGTCAGGCGGAGACAT
TGGAGAAGCGAACGAAGAAACTGTCGGATTTCAGCTCGCTCCAAGGCTGAATGCCGTCGGAAGAATCGAACAGGCGGACC
CAGCTGTTCATTTGCTCATGTCAGAGGATTCGTTTGAAGCGGAAGAGCTTGCCGCAGAAATTGACCAGCTGAACAAAGAG
CGCCAAAAAATGGTCAGCAAAATGACGGATGAAGCGATTGAAATGGTTGAACGGCAAGGGCTCGATCAAACTGCAATTGT
CGTGGCAAAAGCCGGATGGAACCCGGGAGTCGTCGGGATTGTGGCCTCAAAGCTTGTGGACCGTTTCTATCGCCCTGCTA
TTGTGCTTGGCATTGATGAAGAAAAGGGGATCGCTAAAGGTTCGGCCCGAAGCATCAGGGGATTTAATTTATTTGAGAGC
CTTTCTGAATGCAGAGATATTCTTCCTCATTTCGGCGGCCATCCAATGGCAGCGGGGATGACGCTCAAAGCCGAGGATGT
GCCGAATTTGCGAAGCAGGCTGAATGAAATAGCGGACAATACGCTTACGGAAGAGGATTTTGTTCCTGTACAGGAAGTCG
ACCTTGTCTGCAGCGTCGAGGACATTACAGTTGAAAGCATCACAGAAATGAACATGCTTTCTCCTTTTGGCATGCTGAAC
CCGAAACCGCACGTTCTCGTAGAAAACGCAGTACTGGAAGATGTCCGCAAGATAGGGGCAAATAAAACTCATGTCAAAAT
GACGATCAAAAATGAGTCGTCTCAGCTTGATTGCGTCGGTTTTAATAAAGGTGAGCTCGAAGAAGGCATCGTACCTGGAT
CAAGAATTTCCATTGTCGGTGAGATGTCAATCAACGAATGGAACAATCGGAAAAAACCGCAGCTTATGATAAAGGATGCC
GCTGTTTCTGAATGGCAGCTGTTTGATTTAAGGGGAAAACGGACGTGGGAAGATACAGTTTCCGCCCTCCCATCTGCTAA
ACGGGCCATTGTCTCTTTCAAAGAAGACTCAACAACACTTCTTAAAACTGAAGGCCTTCGTCAAGAAGTGCAGGTCATCA
GCTCAGAAGATCAAGCAAAGGCGTTTGACCTCGATGGTGCATATATTGTATTGCTGGATCCGCCGCCTTCGTTGGACATG
CTCGCACGTTTGCTGGAAGGAAAGGCGCCTGAGCGGATATATTTTATTTTTCTCAATCATGAGGACCACTTTTTATCGAC
TTTTCCCGCAAGAGACCACTTTAAATGGTATTATGCGTTCTTGCTGAAAAGAGGCGCTTTTGATGTGAAAAAACACGGTT
CAGAGCTTGCAAAACATAAAGGCTGGTCTGTTGAAACAATCAATTTCATGACAAAGGTGTTTTTTGATCTCGGTTTTGTT
AAAATAGAGAATGGTGTGCTGTCTGTTGTGAGCGGAGCAAAGAAACGCGACTTAACAGACTCACAAACATATCAGGCGAA
ACAGCAGCTGATGGAACTGGATCAAAAGCTGAATTATTCTTCTGCTGAAGAGCTGAAGGAATGGCTGAATAAGCTGATGA
AACAAGATTCAGAGGCTTATGAAAGTACGAGGAGGACATAA

Domains

Predicted by InterproScan.

RecJ OB domain (RecJ_OB)

(453-559)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-769)

DHH family (DHH)

(82-226)

DHHA1 domain (DHHA1)

(315-437)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

98.219

100

0.982

Multiple sequence alignment