Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   MY9_RS13585 Genome accession   NC_017743
Coordinates   2669440..2671836 (-) Length   798 a.a.
NCBI ID   WP_014664799.1    Uniprot ID   -
Organism   Bacillus sp. JS     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2664440..2676836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MY9_RS13560 (MY9_2723) - 2667024..2668085 (-) 1062 WP_014664795.1 AI-2E family transporter -
  MY9_RS21955 - 2668188..2668468 (+) 281 Protein_2627 amino acid ABC transporter permease -
  MY9_RS13570 (MY9_2725) - 2668503..2668634 (-) 132 WP_014664797.1 DUF3918 family protein -
  MY9_RS13575 (MY9_2726) - 2668656..2668847 (-) 192 WP_003225893.1 hypothetical protein -
  MY9_RS13580 (MY9_2727) - 2668859..2669383 (-) 525 WP_081483633.1 PRC-barrel domain-containing protein -
  MY9_RS13585 (MY9_2728) recD2 2669440..2671836 (-) 2397 WP_014664799.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MY9_RS13590 (MY9_2729) - 2671861..2672481 (-) 621 WP_206696623.1 tetratricopeptide repeat protein -
  MY9_RS13595 (MY9_2730) mnmA 2672567..2673682 (-) 1116 WP_004398509.1 tRNA 2-thiouridine(34) synthase MnmA -
  MY9_RS13600 (MY9_2731) - 2673710..2674852 (-) 1143 WP_014664801.1 cysteine desulfurase family protein -
  MY9_RS13605 (MY9_2732) cymR 2674871..2675287 (-) 417 WP_003225879.1 cysteine metabolism transcriptional regulator CymR -
  MY9_RS13610 (MY9_2733) - 2675490..2676755 (+) 1266 WP_014664802.1 replication-associated recombination protein A -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 89154.74 Da        Isoelectric Point: 4.9890

>NTDB_id=50625 MY9_RS13585 WP_014664799.1 2669440..2671836(-) (recD2) [Bacillus sp. JS]
MQQHPDQLKLEEEPYLKGTVNTVIYHNDTNLYTVLKVKVTETSEAIEDKAVSVTGYFPALQEEETYTFYGKIVTHPKFGL
QFQAEHFKKEIPTTKEGIIQYLSSDLFEGIGKKTAEEIVKKLGDSAINKILADASVLYDVPRLSKKKADTLAGALQRHQG
LEQIMISLNQFGFGPQLSMKIYQAYESETLEKIQENPYQLVKDVEGIGFGKADELGGRMGLSGNHPERVKAAILYTLETT
CLSEGHTYIETEQLIIDTQSLLNQSAKEDQRITEMDAANAIIALGENKDIVIEDGRCYFPSLFYAEQNVAKRVKHIASQT
EYDDQFPESEFLLALGELEERMNVQYAPSQKEAIQKALSSPMLLLTGGPGTGKTTVIRGIVELYGELHGVSLDPSAYKKD
EAFPIVLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGAEGFTHTEDQPIEGKLLIIDEASMLDIWLANHLFKAIPDHIQI
IIVGDEDQLPSVGPGQVLRDLLASQVIPTVRLTDIYRQAEGSSIVELAHQMKNGLLPNNLTAPTKDRSFIRCGGSQIKEV
VEKVVANALKKGYTAKDIQVLAPMYRGKAGINELNVMLQDILNPPKEKRRELKFGDVVYRTGDKILQLVNQPENNVFNGD
IGEITSIFYAKENTEKEDMAVVSFDGNEMTFTKKDFNQFTHAYCCSIHKSQGSEFPIVVLPVVKGYYRMLRRNLLYTAIT
RAKKFLILCGEEEALEWGVKNNDATVRQTSLKNRLSVQVEEMDAELEALQKELPFSVHDANIGMEGITPFDFMKEEQL

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=50625 MY9_RS13585 WP_014664799.1 2669440..2671836(-) (recD2) [Bacillus sp. JS]
GTGCAGCAGCATCCGGATCAGCTTAAACTGGAGGAAGAGCCCTATTTAAAAGGGACAGTTAACACAGTCATCTATCATAA
TGACACCAATTTATATACGGTTCTGAAAGTGAAAGTCACAGAGACCTCCGAAGCCATAGAAGATAAAGCCGTATCCGTGA
CGGGCTACTTCCCTGCGCTTCAAGAAGAAGAGACCTACACGTTTTACGGAAAGATCGTAACACACCCGAAATTCGGGCTC
CAATTTCAAGCGGAGCATTTCAAAAAAGAGATACCGACGACTAAGGAAGGCATTATACAATATTTATCGAGTGATTTATT
CGAGGGAATCGGCAAAAAAACAGCTGAAGAAATTGTGAAAAAGCTGGGCGACAGCGCCATTAACAAAATATTGGCTGACG
CTTCAGTGCTTTATGATGTTCCGAGGCTCTCAAAAAAGAAAGCAGACACGCTGGCCGGTGCCTTGCAGCGGCATCAGGGG
CTGGAGCAAATCATGATTTCCCTGAACCAGTTTGGCTTTGGCCCGCAGCTGTCCATGAAAATCTATCAAGCCTATGAATC
CGAGACGCTTGAAAAGATTCAAGAAAATCCTTATCAGCTTGTGAAGGACGTAGAAGGCATCGGGTTTGGAAAAGCGGATG
AGCTGGGCGGCAGAATGGGTCTTTCGGGTAATCATCCTGAGCGGGTAAAAGCTGCGATTCTGTACACGCTTGAAACGACT
TGTCTGTCAGAGGGGCACACGTACATAGAAACGGAGCAGCTGATCATCGATACCCAATCACTGTTAAACCAGTCAGCAAA
GGAAGATCAGCGCATCACAGAAATGGATGCCGCTAACGCGATTATTGCTCTTGGAGAAAATAAAGACATTGTCATAGAAG
ATGGACGCTGTTATTTTCCATCGCTGTTTTACGCTGAACAAAATGTTGCTAAGCGAGTGAAACATATCGCAAGCCAAACT
GAATATGATGACCAGTTTCCCGAATCAGAGTTTTTGCTCGCTTTGGGGGAATTGGAAGAACGGATGAACGTTCAGTATGC
CCCCAGCCAGAAAGAAGCGATTCAAAAAGCTCTTTCCTCGCCGATGCTTCTTTTAACAGGCGGCCCAGGAACAGGGAAAA
CGACGGTTATCAGAGGGATTGTCGAGCTCTACGGAGAGCTTCACGGTGTGTCACTAGACCCGTCAGCTTATAAAAAGGAT
GAAGCTTTTCCGATTGTTTTGGCCGCTCCGACAGGGAGAGCAGCAAAACGAATGAGTGAATCAACGGGACTTCCTGCAGT
CACGATACACAGGCTGCTTGGCTGGAACGGTGCTGAAGGCTTTACTCATACAGAGGATCAGCCGATCGAAGGGAAGCTGT
TAATTATCGATGAAGCCAGTATGCTTGATATATGGCTGGCGAATCATTTGTTCAAGGCGATCCCTGATCATATCCAAATC
ATCATTGTCGGAGACGAAGACCAGTTGCCTTCTGTAGGTCCGGGCCAAGTGCTGAGAGACCTACTGGCATCCCAGGTGAT
TCCCACGGTGAGACTGACAGACATCTACCGCCAGGCTGAGGGGTCATCAATCGTCGAGCTTGCCCACCAGATGAAAAATG
GATTGCTGCCGAACAATTTGACTGCCCCCACAAAGGACCGATCCTTTATTCGCTGCGGAGGCTCGCAAATTAAAGAAGTT
GTTGAAAAAGTTGTCGCCAATGCATTGAAAAAAGGCTATACGGCAAAGGACATTCAGGTCCTCGCTCCGATGTACAGAGG
AAAAGCTGGCATCAATGAGTTGAATGTGATGCTGCAGGACATTTTAAATCCTCCTAAAGAAAAACGGAGAGAATTGAAGT
TCGGGGATGTTGTCTACAGAACCGGAGATAAAATTTTGCAGCTTGTCAATCAGCCGGAAAACAATGTATTCAACGGAGAT
ATTGGCGAAATTACGTCGATATTTTATGCAAAGGAAAATACAGAAAAAGAAGACATGGCCGTCGTTTCTTTTGATGGCAA
TGAAATGACGTTTACGAAAAAAGATTTTAATCAATTTACCCATGCGTATTGCTGTTCTATTCATAAATCGCAGGGAAGTG
AATTTCCGATTGTGGTTTTGCCTGTTGTGAAAGGCTACTATAGAATGCTCAGAAGAAACCTTCTTTATACCGCGATTACA
AGAGCGAAGAAATTTCTCATTTTATGCGGGGAAGAGGAGGCGCTGGAGTGGGGCGTGAAAAATAATGATGCAACTGTCAG
ACAGACCTCCTTAAAAAACAGGCTGTCCGTACAGGTTGAGGAAATGGATGCCGAGCTTGAGGCTCTCCAAAAAGAGCTCC
CATTCAGCGTACACGACGCCAACATTGGCATGGAAGGCATTACACCATTTGATTTTATGAAAGAAGAACAGCTGTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-662)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-248)

AAA domain (AAA_30)

(346-553)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(681-729)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

99.247

99.875

0.991

Multiple sequence alignment