Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   IVB58_RS01115 Genome accession   NZ_CP065051
Coordinates   239760..241328 (-) Length   522 a.a.
NCBI ID   WP_001160340.1    Uniprot ID   N9KKG1
Organism   Acinetobacter baumannii strain 2016GDAB1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 234760..246328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IVB58_RS01100 (IVB58_01090) gpmI 235564..237111 (+) 1548 WP_000128744.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  IVB58_RS01105 (IVB58_01095) - 237127..238311 (+) 1185 WP_000939107.1 S41 family peptidase -
  IVB58_RS01110 (IVB58_01100) pilR 238315..239736 (-) 1422 WP_000840556.1 sigma-54 dependent transcriptional regulator Regulator
  IVB58_RS01115 (IVB58_01105) pilS 239760..241328 (-) 1569 WP_001160340.1 ATP-binding protein Regulator
  IVB58_RS01120 (IVB58_01110) - 241339..241974 (-) 636 WP_000633798.1 response regulator -
  IVB58_RS01125 (IVB58_01115) pbpG 242187..243233 (+) 1047 WP_005140205.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  IVB58_RS01130 (IVB58_01120) thrC 243342..244481 (-) 1140 WP_000063593.1 threonine synthase -
  IVB58_RS01135 (IVB58_01125) - 244537..245838 (-) 1302 WP_000805829.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59213.77 Da        Isoelectric Point: 6.6142

>NTDB_id=506209 IVB58_RS01115 WP_001160340.1 239760..241328(-) (pilS) [Acinetobacter baumannii strain 2016GDAB1]
MQFPLNSSLSHTIFRLGTWYGLYRLIIAVSLNIILVLTDAQTDNSLQQPALYSYTLLGYSLLSLVQLLCFKFIATQATRQ
LILFFIVDIICLSLLTFSVGEPNLQLSLLYVIAIFTSAILLSARMSLLITLLAVIAVIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSIELYQLQNINRYILEQIEEGYLVLDENYDIVVSNPAACSLLGIPPQFANE
KYPLAKWHTDLFEILKFGDLKEGDRFIFESRLSAYSINIKVQHLLVPQQTLTLLILQDAQQINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDPEQQNTLRHMIGKQTKRIDSIVQDTLGLARSERTHPIQIDVKHFIVTLLEEDLFDVK
HSIQLKISDSSLKFLFDEKQLRQVMINLVRNALRHNAPDSPYITINIHSQTNKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRIECPIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=506209 IVB58_RS01115 WP_001160340.1 239760..241328(-) (pilS) [Acinetobacter baumannii strain 2016GDAB1]
ATGCAATTTCCCTTAAATTCATCCTTGTCCCATACGATTTTTCGTTTGGGCACTTGGTATGGCTTATACCGTCTTATTAT
TGCGGTTAGCCTGAATATTATTTTAGTTTTAACCGATGCGCAAACTGATAACAGTTTGCAGCAACCTGCCTTATATTCCT
ACACACTACTCGGCTATTCGCTCTTAAGTCTTGTTCAGCTGTTATGCTTTAAATTTATTGCTACTCAAGCCACACGACAG
CTTATTTTATTTTTTATTGTTGATATTATTTGTTTGAGTTTACTGACTTTTTCTGTGGGTGAACCAAATTTACAACTCAG
CTTACTCTATGTAATTGCCATCTTTACCTCGGCGATTTTGCTCAGCGCAAGAATGTCTTTGCTGATTACATTGCTTGCGG
TTATTGCTGTTATTTACCAACGATTTGTAGGTAGCCTATTTGACTATAACAATCTAAATACTATTGGTAATAGCGCTCTC
TTAGCTTTCTTATTTTTTGTGGTTCACGGAATTGGCCAAATTGCAGTGCAGCGCTTTAAATTACTTGAAGCACTCACCTT
TCACCAGTCAATTGAACTTTATCAACTCCAAAATATTAACCGTTATATCTTAGAACAAATTGAAGAAGGCTATTTAGTTT
TGGATGAGAATTACGACATCGTTGTCAGTAATCCTGCGGCCTGTTCACTCTTGGGTATTCCCCCTCAATTTGCCAATGAA
AAATATCCTTTAGCAAAGTGGCATACCGATTTATTTGAAATTTTAAAGTTTGGCGACTTAAAAGAAGGTGACCGATTCAT
TTTTGAGTCTCGGCTATCGGCGTACTCCATCAACATTAAAGTGCAACACCTTTTGGTCCCACAACAAACGCTAACCCTGC
TCATTTTACAAGATGCCCAACAAATTAATCAGCAAGCACAACAGCTTAAGCTTGCTGCGCTAGGGCAACTCTCAGCAAGT
ATTGCACATGAGATCCGCAATCCTCTCGCTGCAATCGTACAAGCAAATGAGTTACTGAAAGATAGCGATCCAGAACAACA
AAATACTTTGCGTCATATGATTGGCAAACAAACCAAACGTATTGATAGTATTGTTCAAGATACCTTAGGGCTTGCTCGTA
GCGAAAGAACACATCCTATCCAGATCGATGTAAAACACTTCATAGTTACATTGCTCGAAGAAGATTTATTTGACGTTAAA
CATTCAATTCAACTTAAAATTTCGGATAGTTCTTTAAAATTTTTATTTGATGAAAAACAATTAAGACAAGTCATGATTAA
TCTGGTGAGAAATGCTTTACGGCATAATGCCCCCGACTCACCGTACATTACGATCAACATTCATTCACAGACAAATAAAA
TTTATATTGATGTGATCGATTACGGTGAAGGTGTTTCAAAACGTGATATATCTCAATTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATATTTGTCTCATAGTTTTTGTGAGGCGAACCATGCAAAGCTCACCTATGTAGA
GCAAAAACAAGGGGCATGCTTCAGAATAGAATGCCCAATAATATATTGA

Domains

Predicted by InterproScan.

PAS fold (PAS)

(203-250)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-518)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9KKG1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

99.425

100

0.994