Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   IPQ37_RS05255 Genome accession   NZ_CP065041
Coordinates   1061935..1062525 (+) Length   196 a.a.
NCBI ID   WP_005298539.1    Uniprot ID   A0A2T3QKX1
Organism   Photobacterium damselae subsp. damselae strain AS-16-0963-3     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1056935..1067525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IPQ37_RS05235 (IPQ37_05235) lysM 1058229..1058657 (+) 429 WP_086367187.1 peptidoglycan-binding protein LysM -
  IPQ37_RS05240 (IPQ37_05240) - 1058704..1059156 (+) 453 WP_005298533.1 YidB family protein -
  IPQ37_RS05245 (IPQ37_05245) - 1059264..1060163 (-) 900 WP_237042775.1 lysine exporter LysO family protein -
  IPQ37_RS05250 (IPQ37_05250) - 1060471..1061385 (-) 915 WP_005298537.1 HDOD domain-containing protein -
  IPQ37_RS05255 (IPQ37_05255) tfoX 1061935..1062525 (+) 591 WP_005298539.1 TfoX/Sxy family DNA transformation protein Regulator
  IPQ37_RS05260 (IPQ37_05260) dsdC 1062629..1063561 (+) 933 WP_237042776.1 DNA-binding transcriptional regulator DsdC -
  IPQ37_RS05265 (IPQ37_05265) - 1063584..1064579 (-) 996 WP_106341027.1 2-hydroxyacid dehydrogenase -
  IPQ37_RS05270 (IPQ37_05270) - 1064740..1065240 (-) 501 WP_237042777.1 response regulator -
  IPQ37_RS05275 (IPQ37_05275) - 1065237..1067186 (-) 1950 WP_237042778.1 ATP-binding protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 22379.86 Da        Isoelectric Point: 9.5467

>NTDB_id=506147 IPQ37_RS05255 WP_005298539.1 1061935..1062525(+) (tfoX) [Photobacterium damselae subsp. damselae strain AS-16-0963-3]
MRNIKDEFLNYLNDFGPFEKRSMFGGTGVFVDGAMYAIINNGRIFLRGGETLDDELIGLNCGRFKHVKRSTTAIVNYYDI
TTIYLDNEPKCRDLVNKSIQYACAERNIKFSEDSRRLRDLPNMRLTLERMVKKAGIPDVKSFMSLGAVEVYRKVRRSHGS
GVDVKLLWIFAGAVDGCHWTLLKDEQKSVLLKALNN

Nucleotide


Download         Length: 591 bp        

>NTDB_id=506147 IPQ37_RS05255 WP_005298539.1 1061935..1062525(+) (tfoX) [Photobacterium damselae subsp. damselae strain AS-16-0963-3]
GTGAGAAATATCAAGGATGAATTTCTTAATTATTTGAATGACTTCGGTCCTTTTGAAAAACGTTCGATGTTCGGTGGAAC
CGGTGTTTTTGTTGATGGTGCTATGTATGCCATTATCAATAACGGTCGAATTTTTTTACGAGGTGGAGAAACGCTGGATG
ACGAATTGATCGGCTTAAACTGCGGAAGATTCAAGCATGTAAAACGTAGCACAACAGCCATTGTTAATTATTATGATATT
ACGACTATTTATCTTGATAATGAGCCTAAATGCCGTGATTTAGTCAATAAATCAATTCAATATGCTTGTGCAGAACGCAA
CATTAAGTTTTCTGAAGACAGTCGTCGCCTTCGTGACCTACCGAATATGCGTTTAACCTTAGAACGCATGGTGAAAAAAG
CTGGGATTCCAGATGTAAAGAGCTTTATGTCATTGGGGGCTGTTGAAGTATACCGTAAAGTTCGTCGCTCTCATGGTAGT
GGTGTTGATGTGAAATTGTTATGGATTTTTGCTGGTGCCGTCGATGGATGCCATTGGACATTACTAAAAGATGAGCAAAA
ATCAGTACTACTAAAAGCATTAAATAACTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(114-193)

TfoX N-terminal domain (TfoX_N)

(11-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T3QKX1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

54.688

97.959

0.536
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

54.688

97.959

0.536
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

54.688

97.959

0.536
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

54.688

97.959

0.536
  tfoX Vibrio cholerae strain A1552

54.688

97.959

0.536
  tfoX Vibrio campbellii strain DS40M4

54.891

93.878

0.515
  tfoX Vibrio parahaemolyticus RIMD 2210633

54.348

93.878

0.51
  tfoX Aliivibrio fischeri ES114

48.454

98.98

0.48