Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   I1A55_RS07910 Genome accession   NZ_CP065040
Coordinates   1561305..1562084 (+) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus altitudinis strain Ba1449     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1556305..1567084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I1A55_RS07890 trmFO 1557009..1558313 (+) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  I1A55_RS07895 xerC 1558376..1559293 (+) 918 WP_007499616.1 tyrosine recombinase XerC -
  I1A55_RS07900 hslV 1559308..1559853 (+) 546 WP_206114324.1 ATP-dependent protease subunit HslV -
  I1A55_RS07905 hslU 1559870..1561270 (+) 1401 WP_017367242.1 HslU--HslV peptidase ATPase subunit -
  I1A55_RS07910 codY 1561305..1562084 (+) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  I1A55_RS07915 flgB 1562373..1562762 (+) 390 WP_017359092.1 flagellar basal body rod protein FlgB -
  I1A55_RS07920 flgC 1562762..1563214 (+) 453 WP_007499610.1 flagellar basal body rod protein FlgC -
  I1A55_RS07925 fliE 1563226..1563543 (+) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  I1A55_RS07930 fliF 1563594..1565186 (+) 1593 WP_017359091.1 flagellar basal-body MS-ring/collar protein FliF -
  I1A55_RS07935 fliG 1565198..1566214 (+) 1017 WP_008344808.1 flagellar motor switch protein FliG -
  I1A55_RS07940 fliH 1566207..1566971 (+) 765 WP_008344806.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=506093 I1A55_RS07910 WP_007499612.1 1561305..1562084(+) (codY) [Bacillus altitudinis strain Ba1449]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=506093 I1A55_RS07910 WP_007499612.1 1561305..1562084(+) (codY) [Bacillus altitudinis strain Ba1449]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCGATGCTGCAAGATGCAGCGGGGAAACCGGTTAATTTTAAAGAAAT
GGCAGAAACACTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTTGGCTACTCCATTA
ACCAGCAGATTGAAAATGCACGTATGAAAAAAATGCTGGAAGATCGTCAGTTCCCTGAAGAATATACAAAAAGCTTATTC
AATGTCCCTGAAACATCTTCAAACCTTGACATCAACAGTGAGTACACAGCTTTCCCGATTGAGAACCGTGATTTATTCCA
ATCAGGTTTGACAACGATTGTACCAATCATCGGAGGCGGAGACCGCTTAGGGACGTTAATCCTTTCTCGTTTGCAGGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGCGCAACAGTTGTTGGAATGGAGATTCTTCGTGAGAAAGCGGAA
GAAATTGAAGAAGAAGCAAGAAGTAAAGCGGTTGTTCAAATGGCGATCAGCTCTCTTTCATACAGTGAACTTGAAGCGAT
TGAACATATCTTTGAAGAACTTGATGGAAACGAAGGGCTGCTTGTGGCAAGTAAGATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTAAACGCACTTCGTAAATTAGAAAGTGCAGGCGTTATTGAATCTCGTTCTCTTGGAATGAAGGGAACA
TACATTAAAGTATTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCACTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471