Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   MY9_RS08880 Genome accession   NC_017743
Coordinates   1736748..1737527 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus sp. JS     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1731748..1742527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MY9_RS08860 (MY9_1759) trmFO 1732441..1733748 (+) 1308 WP_014663960.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  MY9_RS08865 (MY9_1760) xerC 1733816..1734730 (+) 915 WP_014663961.1 tyrosine recombinase XerC -
  MY9_RS08870 (MY9_1761) clpQ 1734743..1735288 (+) 546 WP_014663962.1 ATP-dependent protease subunit ClpQ -
  MY9_RS08875 (MY9_1762) hslU 1735305..1736708 (+) 1404 WP_014476801.1 HslU--HslV peptidase ATPase subunit -
  MY9_RS08880 (MY9_1763) codY 1736748..1737527 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  MY9_RS08885 (MY9_1765) flgB 1737908..1738297 (+) 390 WP_014663964.1 flagellar basal body rod protein FlgB -
  MY9_RS08890 (MY9_1766) flgC 1738297..1738749 (+) 453 WP_014663965.1 flagellar basal body rod protein FlgC -
  MY9_RS08895 (MY9_1767) fliE 1738760..1739080 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  MY9_RS08900 (MY9_1768) fliF 1739126..1740736 (+) 1611 WP_040083177.1 flagellar basal-body MS-ring/collar protein FliF -
  MY9_RS08905 (MY9_1769) fliG 1740749..1741765 (+) 1017 WP_014663967.1 flagellar motor switch protein FliG -
  MY9_RS08910 (MY9_1770) fliH 1741758..1742510 (+) 753 WP_041521507.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=50604 MY9_RS08880 WP_003220850.1 1736748..1737527(+) (codY) [Bacillus sp. JS]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=50604 MY9_RS08880 WP_003220850.1 1736748..1737527(+) (codY) [Bacillus sp. JS]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTCATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATACACTGCTTTCCCTGTTGAGAACAGAGACTTATTCCA
AGCTGGTTTAACGACAATTGTGCCGATCATCGGAGGAGGGGAAAGATTAGGAACACTCATTCTTTCACGTTTACAGGATC
AATTCAATGATGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGTAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGCCTTCTCGTTGCTAGTAAAATCGCTGACCGCGTCGGCATTACCC
GTTCGGTTATTGTGAACGCACTGAGAAAGCTGGAGAGTGCCGGCGTCATTGAGTCAAGATCATTAGGAATGAAAGGTACT
TATATCAAAGTGCTAAACAACAAATTCCTAATCGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment