Detailed information NTG0505955

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: F126LOC_RS06485
• Genome accession: NZ_CP065031
• Coordinates: 1464606..1465451 (+)
• Length: 281 a.a.
• NCBI ID: WP_119871904.1
• Uniprot ID: -
• Organism: Pectobacterium brasiliense strain F126
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1459606..1470451

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F126LOC_RS06455 (F126LOC_006455)	gspI	1459998..1460363 (+)	366	WP_039284733.1	type II secretion system minor pseudopilin GspI	-
F126LOC_RS06460 (F126LOC_006460)	gspJ	1460363..1461013 (+)	651	WP_119871900.1	type II secretion system minor pseudopilin GspJ	-
F126LOC_RS06465 (F126LOC_006465)	gspK	1461010..1461996 (+)	987	WP_014916095.1	type II secretion system minor pseudopilin GspK	-
F126LOC_RS06470 (F126LOC_006470)	gspL	1461993..1463270 (+)	1278	WP_119871901.1	type II secretion system protein GspL	-
F126LOC_RS06475 (F126LOC_006475)	gspM	1463267..1463761 (+)	495	WP_119871902.1	type II secretion system protein GspM	-
F126LOC_RS06480 (F126LOC_006480)	-	1463751..1464497 (+)	747	WP_119871903.1	type II secretion system protein N	-
F126LOC_RS06485 (F126LOC_006485)	pilD	1464606..1465451 (+)	846	WP_119871904.1	prepilin peptidase	Machinery gene
F126LOC_RS06490 (F126LOC_006490)	ypdK	1465612..1465686 (-)	75	WP_099606229.1	membrane protein YpdK	-
F126LOC_RS06495 (F126LOC_006495)	-	1466044..1467069 (-)	1026	WP_014916091.1	LLM class flavin-dependent oxidoreductase	-
F126LOC_RS06500 (F126LOC_006500)	-	1467379..1468443 (+)	1065	WP_119871905.1	ABC transporter substrate-binding protein	-
F126LOC_RS06505 (F126LOC_006505)	-	1468440..1469477 (+)	1038	WP_119871906.1	FecCD family ABC transporter permease	-
F126LOC_RS06510 (F126LOC_006510)	-	1469479..1470249 (+)	771	WP_119871907.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 281 a.a.
• Molecular weight: 31466.46 Da
• Isoelectric Point: 6.4557

>NTDB_id=505955 F126LOC_RS06485 WP_119871904.1 1464606..1465451(+) (pilD) [Pectobacterium brasiliense strain F126]
MDDLREFAQLFPAWWFGSLGVLGLIVGSFLNVVIYRLPIMLERRWRQDIELETGMADSDPDKRYNLWWPPSSCPHCQQAI
AVKDNIPLFSWLWLRGRSRCCHQSVSVQYPLVEVITMLAFLTAGLLWLPGMALWGALILLSFLLVLTVIDIKTLLLPDVL
TLSLLWIGLLFNLSETFVPLNDAVVGAMAGYLSLWLLYWVFKYVTGKEALGYGDFKLLAALGAWLGWQALPNLVLVAALS
GLVVTLVWRGLRKEDTAKPLAFGPWLAMGGVFGVIMNGLNL

Nucleotide

• Length: 846 bp

>NTDB_id=505955 F126LOC_RS06485 WP_119871904.1 1464606..1465451(+) (pilD) [Pectobacterium brasiliense strain F126]
GTGGACGATTTAAGGGAATTTGCACAGCTGTTTCCGGCATGGTGGTTTGGATCGCTGGGCGTGCTGGGATTGATTGTTGG
CAGTTTTTTGAACGTGGTGATTTACCGCTTGCCGATTATGCTGGAGCGTCGCTGGCGGCAGGACATCGAGCTTGAAACGG
GCATGGCCGATTCCGATCCTGATAAGCGCTACAACCTGTGGTGGCCGCCTTCGTCGTGCCCACACTGCCAGCAGGCTATT
GCGGTGAAGGATAACATCCCGCTATTCAGTTGGCTGTGGTTGCGTGGCCGCTCCCGCTGCTGTCATCAATCAGTATCTGT
GCAATATCCGTTAGTGGAAGTCATCACCATGCTGGCTTTTCTGACGGCAGGTTTACTCTGGCTACCCGGTATGGCGCTGT
GGGGGGCGTTGATTCTGCTGTCATTCCTGTTGGTGCTGACCGTTATTGATATAAAAACGCTGCTGCTGCCGGATGTGCTT
ACGCTGTCGCTTCTGTGGATAGGGCTGCTGTTTAATCTGTCGGAGACATTTGTCCCATTGAATGATGCCGTCGTCGGCGC
GATGGCCGGTTATTTATCTCTGTGGCTGCTTTATTGGGTATTCAAATACGTAACGGGCAAAGAGGCGCTGGGGTACGGTG
ATTTTAAGTTGCTGGCTGCGCTGGGTGCCTGGCTGGGCTGGCAGGCATTGCCGAATCTGGTTCTGGTGGCGGCGCTGAGC
GGGTTGGTCGTGACTCTCGTCTGGCGCGGATTGCGTAAAGAGGATACGGCTAAACCGCTGGCCTTTGGCCCCTGGCTGGC
AATGGGCGGGGTATTTGGCGTGATAATGAACGGATTGAATCTGTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-123)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50.185	96.441	0.484
pilD	Neisseria gonorrhoeae MS11	47.126	92.883	0.438
pilD	Vibrio campbellii strain DS40M4	44.981	95.73	0.431
pilD	Acinetobacter baumannii D1279779	41.758	97.153	0.406
pilD	Acinetobacter nosocomialis M2	41.392	97.153	0.402