Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   I6L85_RS09400 Genome accession   NZ_CP077248
Coordinates   1904061..1906424 (+) Length   787 a.a.
NCBI ID   WP_111723206.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS 1455     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1899061..1911424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L85_RS09375 (I6L85_09375) mutS/mutS2 1899078..1901411 (-) 2334 WP_111723207.1 endonuclease MutS2 Machinery gene
  I6L85_RS09380 (I6L85_09380) - 1901467..1902015 (-) 549 WP_045634571.1 CvpA family protein -
  I6L85_RS09385 (I6L85_09385) - 1902015..1902320 (-) 306 WP_008808274.1 hypothetical protein -
  I6L85_RS09390 (I6L85_09390) rnhC 1902470..1903360 (+) 891 WP_105026173.1 ribonuclease HIII -
  I6L85_RS09395 (I6L85_09395) lepB 1903364..1903966 (+) 603 WP_048776365.1 signal peptidase I -
  I6L85_RS09400 (I6L85_09400) recD/recD2/recDB 1904061..1906424 (+) 2364 WP_111723206.1 ATP-dependent RecD-like DNA helicase Machinery gene
  I6L85_RS09405 (I6L85_09405) - 1906484..1907428 (+) 945 WP_061597156.1 hypothetical protein -
  I6L85_RS09410 (I6L85_09410) - 1907734..1908372 (-) 639 WP_101771796.1 TetR/AcrR family transcriptional regulator -
  I6L85_RS09415 (I6L85_09415) - 1908448..1909194 (-) 747 WP_111723205.1 CPBP family intramembrane glutamic endopeptidase -
  I6L85_RS09420 (I6L85_09420) - 1909240..1910034 (-) 795 WP_111723204.1 CPBP family intramembrane glutamic endopeptidase -
  I6L85_RS09425 (I6L85_09425) - 1910353..1910679 (-) 327 WP_111723203.1 hypothetical protein -

Sequence

Protein


Download         Length: 787 a.a.        Molecular weight: 88391.57 Da        Isoelectric Point: 4.5894

>NTDB_id=505955 I6L85_RS09400 WP_111723206.1 1904061..1906424(+) (recD/recD2/recDB) [Streptococcus gordonii strain FDAARGOS 1455]
MEFYFSGTVERIIFENPNNFFRILLLDIEDTDAEFDDFKIIVTGTMADIMEGQDYTFWGTLVQHPKYGEQLKVTRYERAK
PSSKGLVKYFASDHFKGIGIKTAQKIVDLYGDNTIDQILADPSRLVTINGLSSTNREAFVSKLRQNYGTEMLLSKLAEYG
IPNKLALQIQDTYKEETLEIVQKYPYQLVEDIQGIGFKIADQLAQQLGIESDAPERFRAGLVHTLFSQSMETGDTYIEAR
DLLSHTIDLLENARQVELNPALVADELAHLIEEDKIQNVDTKIFENSLYFAEEGIRSNLIRILEKGKQETFDTPKLESII
EQVEQDLGICYDHIQKKAICDAINHKVFILTGGPGTGKTTVINGIIATYAALHKLDLAKKQELPILLAAPTGRAARRMNE
LTGLPSATIHRHLGMTGDDDISHLDDYLDADFIIVDEFSMVDTWLANQLLSNISSNSKILIVGDADQLPSVSPGQVLADL
LKIPLLPQTKLTKIYRQGEDSTIVTLASQIQQGLLPADFTEKKADRSYFEASGEYIPDMIKKIVAAAIRSGIPAQDVQVL
APMYRGPAGIDQINQLMQDLINPSEKDQLVFEAPDCQYRQGDKVIHLVNDAESNVFNGDLGYITDLLPAKYTDSKQDELT
INFDGNEIVYQRSEWYKIRLAYAMSIHKSQGSEFPVVILPITKSSHRMLQRNLVYTAITRAKSKLILLGEKAAFDYAAKN
TGTARKTYLIPRFSDLLEREEPAEVVTTNSDTVDQIPEDGFILTLDNYLSIDPMIGIREEDIKDIFK

Nucleotide


Download         Length: 2364 bp        

>NTDB_id=505955 I6L85_RS09400 WP_111723206.1 1904061..1906424(+) (recD/recD2/recDB) [Streptococcus gordonii strain FDAARGOS 1455]
ATGGAATTCTATTTTTCAGGAACCGTCGAACGCATTATTTTTGAAAATCCCAACAATTTCTTTCGAATTTTGTTACTGGA
TATCGAGGACACAGATGCAGAATTTGATGATTTTAAGATTATCGTGACCGGAACCATGGCCGATATCATGGAAGGACAAG
ACTATACTTTTTGGGGAACTCTTGTTCAACATCCCAAATACGGGGAACAGCTAAAAGTAACTCGCTACGAAAGAGCCAAG
CCAAGCAGTAAGGGTCTAGTCAAGTATTTTGCTAGCGATCATTTTAAAGGGATCGGTATTAAGACCGCCCAAAAGATAGT
AGATCTCTATGGCGATAATACGATTGACCAGATCTTGGCTGATCCTAGCCGACTCGTAACTATTAACGGCCTTTCTTCAA
CCAATCGGGAAGCCTTCGTCAGCAAACTGAGACAAAATTACGGCACAGAGATGTTGCTCTCTAAACTCGCTGAATATGGC
ATTCCTAATAAATTAGCCTTGCAGATTCAAGATACCTACAAAGAAGAAACGCTGGAAATTGTCCAAAAATATCCGTATCA
ACTAGTTGAGGACATTCAAGGTATTGGTTTCAAAATAGCTGACCAGTTGGCCCAGCAACTAGGTATTGAAAGCGACGCTC
CAGAGCGTTTCCGGGCTGGACTTGTTCATACCCTTTTCAGCCAGTCTATGGAGACAGGTGACACTTATATAGAAGCACGT
GACTTACTATCCCACACCATTGATTTGCTGGAGAATGCCCGTCAGGTTGAACTTAACCCTGCCTTGGTAGCGGATGAATT
GGCCCACCTCATTGAAGAAGATAAAATTCAAAACGTTGATACAAAAATCTTTGAAAACAGTCTTTATTTCGCCGAGGAAG
GTATTCGTAGTAATCTGATTCGGATTCTAGAAAAAGGCAAACAAGAAACCTTTGATACCCCAAAACTCGAAAGTATCATC
GAACAAGTCGAGCAAGATTTAGGAATCTGCTATGACCATATTCAAAAGAAGGCCATCTGCGATGCCATTAATCATAAGGT
GTTTATTCTGACGGGTGGGCCGGGAACTGGTAAAACAACTGTTATCAACGGCATCATTGCTACTTATGCTGCTCTTCACA
AACTAGATTTGGCTAAGAAACAGGAATTACCTATTCTGCTTGCTGCTCCGACTGGACGAGCCGCCAGACGAATGAATGAA
TTGACCGGGCTACCCAGTGCTACTATTCACCGGCATCTGGGAATGACTGGAGATGATGATATCAGTCATTTAGATGACTA
TTTGGATGCTGACTTCATCATTGTGGATGAGTTCTCTATGGTCGATACTTGGCTGGCCAATCAACTGCTCAGCAATATTT
CTTCCAACAGTAAGATCCTCATTGTGGGGGATGCTGACCAGCTTCCGTCTGTCAGTCCAGGTCAGGTTCTGGCCGATCTT
TTAAAAATACCTCTCTTACCCCAAACTAAACTAACAAAAATCTACCGGCAGGGAGAAGATTCAACAATCGTTACCCTAGC
CAGTCAAATCCAGCAAGGACTTCTGCCGGCTGATTTTACTGAAAAAAAGGCGGATCGATCCTATTTCGAAGCGTCTGGCG
AGTATATCCCTGATATGATTAAGAAAATCGTAGCCGCTGCCATTCGTAGTGGCATCCCTGCCCAGGACGTCCAAGTCCTG
GCTCCTATGTACCGAGGACCCGCAGGAATCGACCAGATCAACCAACTCATGCAAGATTTAATAAATCCATCAGAAAAAGA
CCAACTGGTCTTTGAAGCGCCAGACTGCCAATACCGGCAAGGGGACAAGGTAATTCATCTGGTCAACGATGCTGAAAGCA
ATGTGTTTAATGGGGACTTGGGCTATATCACGGACTTGTTGCCAGCAAAATACACCGACTCTAAACAAGATGAACTTACC
ATCAACTTCGATGGAAATGAAATCGTCTACCAACGTAGCGAGTGGTACAAGATTCGCTTGGCTTATGCCATGAGTATTCA
TAAATCACAAGGTAGTGAATTTCCTGTCGTGATTCTGCCAATCACCAAGAGTAGCCACCGCATGCTCCAGCGCAATCTGG
TCTACACAGCCATTACCCGGGCCAAGAGCAAGCTGATCCTGCTTGGGGAAAAAGCAGCCTTTGACTATGCTGCAAAAAAC
ACCGGCACCGCCCGCAAAACTTATCTTATTCCTCGTTTTTCTGATCTTTTAGAAAGAGAAGAGCCTGCTGAAGTTGTCAC
CACTAATTCTGACACAGTCGATCAAATTCCTGAAGATGGTTTTATCCTTACTCTTGATAACTACCTCAGTATTGATCCCA
TGATTGGAATTAGAGAAGAGGATATTAAAGATATTTTTAAATAA

Domains

Predicted by InterProScan.

AAA domain (AAA_30)

(334-522)

Helix-hairpin-helix containing domain (HHH_RecD2)

(146-236)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(661-708)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(573-643)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

42.035

94.917

0.399