Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   I6L85_RS01785 Genome accession   NZ_CP077248
Coordinates   330778..332046 (-) Length   422 a.a.
NCBI ID   WP_111724134.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS 1455     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 325778..337046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L85_RS01755 (I6L85_01755) - 327090..327599 (-) 510 WP_111724137.1 helix-turn-helix domain-containing protein -
  I6L85_RS01760 (I6L85_01760) - 327807..327989 (+) 183 WP_080551212.1 hypothetical protein -
  I6L85_RS01765 (I6L85_01765) - 328035..329012 (+) 978 WP_111724136.1 replication initiation protein -
  I6L85_RS01770 (I6L85_01770) - 329024..329212 (+) 189 WP_000369785.1 DUF3173 domain-containing protein -
  I6L85_RS01775 (I6L85_01775) - 329214..330353 (+) 1140 WP_111724135.1 site-specific integrase -
  I6L85_RS01785 (I6L85_01785) rarA 330778..332046 (-) 1269 WP_111724134.1 replication-associated recombination protein A Machinery gene
  I6L85_RS01790 (I6L85_01790) - 332134..332604 (+) 471 WP_111724133.1 DUF3013 family protein -
  I6L85_RS01795 (I6L85_01795) - 332614..333066 (+) 453 WP_111724132.1 NUDIX hydrolase -
  I6L85_RS01800 (I6L85_01800) - 333063..333530 (+) 468 WP_111724131.1 GNAT family N-acetyltransferase -
  I6L85_RS01805 (I6L85_01805) prmA 333673..334626 (+) 954 WP_172455869.1 50S ribosomal protein L11 methyltransferase -
  I6L85_RS01810 (I6L85_01810) - 334627..335370 (+) 744 WP_111724129.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46630.17 Da        Isoelectric Point: 5.8721

>NTDB_id=505883 I6L85_RS01785 WP_111724134.1 330778..332046(-) (rarA) [Streptococcus gordonii strain FDAARGOS 1455]
MPENLALRMRPTDIDQIIGQQHLVGPGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLSNDDIRTAIQ
LALTDKERGFDFPVELDDEALDFIAISTNGDLRSAYNSLDLAVLSTPEDGKGIRHITLDVMENSLQKSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTVIAYEDIGLANPDAQVHTVTALEAAQRIGFPEARILIANIV
IDLALSPKSNSAYVAMDKALADLRKNGNLPIPRHLRDGHYAGSKELGNAQDYLYPHSYPGNWVKQDYLPDKIKDANYFTP
NENGKYERALGMTKDKIDQLKK

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=505883 I6L85_RS01785 WP_111724134.1 330778..332046(-) (rarA) [Streptococcus gordonii strain FDAARGOS 1455]
ATGCCAGAAAACCTAGCCCTGCGCATGCGGCCTACTGACATTGATCAGATTATCGGCCAGCAACATCTGGTCGGACCCGG
GAAAATCATCCGTCGCATGGTTGAAGCCAATCGCCTGTCCTCAATGATTCTCTACGGGCCACCCGGCATCGGCAAAACCT
CTATCGCCTCGGCTATTGCCGGCACAACCAAGTTTGCCTTTAGGACCTTTAACGCCACCGTAGATAGCAAGAAACGCCTG
CAGGAGATTGCTGAAGAAGCGAAATTCTCCGGCGGATTGGTGCTCCTGCTAGATGAGATTCACCGTTTGGACAAGACCAA
GCAAGACTTCCTGCTACCACTATTAGAAAGCGGTCTGGTCATCATGATTGGAGCGACGACGGAAAATCCTTTCTTTTCTG
TCACTCCTGCTATCCGAAGCCGGGTTCAGATATTTGAGCTTGAGCCCCTCAGCAACGACGACATTCGGACAGCCATCCAG
CTAGCCTTGACGGATAAGGAACGAGGATTTGATTTCCCAGTGGAGCTAGACGATGAAGCTCTGGACTTCATTGCCATCTC
TACCAACGGAGACCTGCGCTCCGCCTATAACTCACTGGATTTAGCTGTACTCTCTACTCCAGAAGATGGTAAGGGCATCC
GCCACATCACGCTTGATGTCATGGAAAACAGCCTGCAAAAGAGCTATATCACCATGGATAAGGACGGGGACGGCCATTAC
GATGTCCTCTCTGCCCTGCAGAAGTCCATCCGTGGCTCTGATGTCAATGCCAGTCTCCACTACGCGGCTCGCCTCGTTGA
AGCAGGAGACCTGCCTAGCCTAGCTCGACGATTGACCGTTATCGCTTACGAAGATATTGGTCTGGCAAATCCAGACGCGC
AAGTCCATACCGTTACAGCTCTAGAAGCAGCTCAACGGATCGGCTTTCCTGAAGCTCGCATCCTCATTGCCAATATTGTC
ATTGATTTGGCGCTGTCGCCCAAGTCCAACTCAGCCTACGTCGCTATGGACAAGGCCCTGGCCGACCTAAGAAAGAATGG
AAATCTGCCCATCCCACGCCACTTACGAGATGGCCACTATGCCGGAAGCAAGGAATTAGGCAACGCACAGGACTATCTCT
ACCCTCACTCCTATCCCGGAAATTGGGTCAAGCAGGACTATCTACCCGATAAGATAAAAGACGCCAATTATTTCACGCCT
AATGAGAATGGCAAATACGAGCGAGCCCTTGGAATGACAAAGGATAAGATTGATCAGCTCAAAAAATGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(173-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-410)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.569

99.052

0.59