Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   I6L84_RS09620 Genome accession   NZ_CP077224
Coordinates   1982305..1984659 (+) Length   784 a.a.
NCBI ID   WP_060553147.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS 1454     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1977305..1989659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L84_RS09595 (I6L84_09595) mutS/mutS2 1977322..1979655 (-) 2334 WP_060553146.1 endonuclease MutS2 Machinery gene
  I6L84_RS09600 (I6L84_09600) - 1979711..1980259 (-) 549 WP_060553313.1 CvpA family protein -
  I6L84_RS09605 (I6L84_09605) - 1980259..1980564 (-) 306 WP_008808274.1 hypothetical protein -
  I6L84_RS09610 (I6L84_09610) rnhC 1980714..1981604 (+) 891 WP_045505412.1 ribonuclease HIII -
  I6L84_RS09615 (I6L84_09615) lepB 1981608..1982210 (+) 603 WP_048776365.1 signal peptidase I -
  I6L84_RS09620 (I6L84_09620) recD/recD2/recDB 1982305..1984659 (+) 2355 WP_060553147.1 ATP-dependent RecD-like DNA helicase Machinery gene
  I6L84_RS09625 (I6L84_09625) - 1984710..1985348 (-) 639 WP_060553148.1 TetR/AcrR family transcriptional regulator -
  I6L84_RS09630 (I6L84_09630) - 1985424..1986173 (-) 750 WP_060553149.1 CPBP family intramembrane glutamic endopeptidase -
  I6L84_RS09635 (I6L84_09635) - 1986163..1986957 (-) 795 WP_060553150.1 CPBP family intramembrane glutamic endopeptidase -
  I6L84_RS09640 (I6L84_09640) - 1987275..1987601 (-) 327 WP_060553151.1 hypothetical protein -
  I6L84_RS09645 (I6L84_09645) dinB 1987813..1988877 (-) 1065 WP_060553152.1 DNA polymerase IV -

Sequence

Protein


Download         Length: 784 a.a.        Molecular weight: 88094.30 Da        Isoelectric Point: 4.6291

>NTDB_id=505848 I6L84_RS09620 WP_060553147.1 1982305..1984659(+) (recD/recD2/recDB) [Streptococcus gordonii strain FDAARGOS 1454]
MEFYFSGTVERIIFENPNNFFRILLLDIEDTDAEFDDFEIIVTGTMADIMEGQDYTFWGTLVQHPKYGEQLKVTRYERAK
PTSKGLVKYFASDHFKGIGVKTAQKIVDLYGDNTIDQILADPSRLVSINGLSAVNREAFVSKLRQNYGTEMLLSKLAEYG
IPNKLALQIQDTYKEETLEIVQKYPYQLVEDIQGIGFKIADQLAQQLGIESDAPERFRAGLVHTLFSQSMETGDTYIEAR
DLLSHTIDLLENARQVELDPALVADELAHLIEEDKIQNVETKIFENSLYFAEEGIRSNLIRILEKGKQETFDAPKLESII
EQVEQDLGICYDHIQKKAICDAINHKVFILTGGPGTGKTTVINGIIATYATLHKLDLAKKQELPILLAAPTGRAARRMNE
LTGLPSATIHRHLGMTGDDDTSHLDDYLDADFIIVDEFSMVDTWLANQLLSNISSNSKILIVGDADQLPSVSPGQVLADL
LKIPILPQTKLTKIYRQGEDSTIVTLASQIQQGLLPADFTEKKADRSYFEATSEYIPDMIKKIVAAAIRSGIPAQNVQVL
APMYRGPAGIDQVNQLMQDLINPSEKDQLVFEAPDCQYRQGDKVIHLVNDAESNVFNGDLGYITDLLPAKYTDSKQDELT
INFDGNEIVYQRSEWYKIRLAYAMSIHKSQGSEFPVVILPITKSSHRMLQRNLVYTAITRAKSKLILLGEFSAFQFAVKN
TGTARKTYLVERFADLEAPQEPIHTPMDRLEKAVGNYVLTEENFLKIDPLIGLTEEDIHSIFIT

Nucleotide


Download         Length: 2355 bp        

>NTDB_id=505848 I6L84_RS09620 WP_060553147.1 1982305..1984659(+) (recD/recD2/recDB) [Streptococcus gordonii strain FDAARGOS 1454]
ATGGAATTCTATTTTTCAGGAACCGTCGAACGCATTATATTTGAAAATCCCAACAATTTCTTTCGAATTTTGTTACTGGA
TATCGAGGACACAGATGCAGAATTTGATGATTTTGAGATTATCGTGACCGGAACCATGGCCGATATCATGGAAGGACAAG
ACTACACTTTTTGGGGAACTCTTGTCCAGCATCCCAAATACGGGGAACAGCTAAAAGTAACTCGCTACGAAAGAGCAAAG
CCAACTAGTAAGGGCCTGGTCAAGTATTTTGCTAGCGATCATTTTAAAGGGATCGGTGTTAAGACCGCCCAAAAGATAGT
AGACCTCTATGGTGATAATACGATTGACCAGATCTTAGCTGATCCTAGCCGGCTCGTAAGTATTAACGGCCTTTCTGCAG
TCAATCGGGAAGCCTTCGTCAGCAAACTGAGACAAAATTACGGCACAGAGATGTTGCTCTCTAAACTCGCTGAATATGGC
ATCCCCAATAAACTTGCCTTGCAGATTCAAGACACCTATAAAGAAGAAACGCTGGAAATTGTCCAAAAATATCCTTATCA
ACTAGTTGAGGACATTCAAGGTATTGGTTTCAAAATAGCTGACCAGTTGGCCCAGCAACTAGGTATTGAAAGCGACGCTC
CAGAGCGTTTCCGGGCTGGACTTGTTCATACCCTTTTCAGCCAGTCTATGGAGACAGGTGATACTTATATAGAAGCACGT
GACTTACTATCCCACACCATTGATTTGCTGGAGAATGCCCGTCAGGTTGAACTTGACCCTGCCTTGGTAGCGGATGAATT
GGCCCACCTCATTGAAGAAGATAAGATTCAAAACGTCGAAACAAAAATCTTTGAAAACAGTCTTTATTTCGCCGAGGAAG
GTATCCGTAGCAATCTGATTCGGATTCTAGAAAAAGGCAAACAAGAAACCTTTGATGCCCCAAAACTCGAAAGTATCATC
GAACAAGTCGAGCAAGATTTAGGAATCTGCTATGACCATATTCAAAAGAAGGCTATCTGCGATGCCATTAATCATAAGGT
GTTTATTCTGACGGGTGGGCCAGGAACTGGTAAAACAACTGTTATCAACGGCATCATTGCTACTTATGCTACTCTTCATA
AGCTAGATTTAGCTAAAAAACAGGAATTACCTATTCTGCTTGCTGCTCCGACTGGACGAGCTGCTAGACGAATGAATGAA
TTGACTGGGCTACCCAGTGCTACTATTCACCGGCATCTGGGGATGACTGGAGATGATGATACCAGTCATTTAGATGACTA
TTTGGATGCTGATTTCATCATTGTAGACGAGTTCTCTATGGTCGATACTTGGCTGGCCAATCAACTGCTCAGCAATATTT
CTTCCAACAGTAAGATCCTCATTGTGGGGGATGCTGACCAGCTTCCGTCTGTCAGTCCCGGTCAGGTTCTGGCCGATCTT
TTAAAAATACCTATCTTGCCTCAAACCAAGCTGACAAAAATCTACCGGCAAGGAGAAGATTCAACAATTGTTACCCTGGC
TAGTCAAATCCAGCAAGGACTGCTACCAGCTGATTTTACTGAAAAAAAGGCGGATCGTTCCTATTTTGAAGCAACTAGTG
AATATATCCCTGATATGATTAAAAAAATCGTAGCCGCTGCCATCCGCAGTGGCATCCCTGCCCAGAACGTCCAAGTCTTG
GCTCCTATGTACCGAGGACCCGCAGGAATCGACCAAGTCAACCAACTCATGCAGGATCTGATAAATCCATCAGAAAAAGA
CCAACTGGTCTTTGAAGCACCAGACTGCCAGTACCGGCAAGGAGACAAGGTCATCCACCTTGTCAATGATGCTGAAAGCA
ATGTGTTTAATGGGGACTTGGGCTATATCACGGACTTGTTGCCAGCAAAATACACCGACTCTAAGCAAGATGAACTTACC
ATCAACTTCGATGGAAATGAAATCGTCTACCAACGTAGCGAGTGGTACAAGATTCGCTTGGCTTATGCCATGAGTATTCA
TAAATCACAAGGTAGTGAATTTCCTGTCGTGATTCTGCCAATCACCAAGAGTAGCCACCGCATGCTCCAGCGCAATCTGG
TCTACACAGCCATTACCCGGGCCAAGAGCAAGCTCATTCTTTTAGGAGAATTTTCTGCCTTTCAATTTGCAGTAAAAAAC
ACGGGCACTGCCCGCAAAACCTATCTGGTCGAGCGTTTTGCTGACCTAGAAGCCCCACAGGAACCTATCCACACTCCTAT
GGATAGGTTGGAAAAAGCTGTGGGAAACTATGTCTTGACAGAAGAAAATTTCCTGAAAATCGACCCCCTAATCGGCCTGA
CCGAGGAAGATATCCACAGTATATTCATCACATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(146-236)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(661-708)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(574-643)

AAA domain (AAA_30)

(334-526)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

41.042

100

0.412