Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   SCI_RS01275 Genome accession   NC_022238
Coordinates   238271..240625 (-) Length   784 a.a.
NCBI ID   WP_020997584.1    Uniprot ID   U2ZMF3
Organism   Streptococcus constellatus subsp. pharyngis C1050     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 233271..245625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCI_RS01260 (SCI_0250) pflB 233700..236015 (-) 2316 WP_006269110.1 formate C-acetyltransferase -
  SCI_RS01265 (SCI_0251) - 236244..236903 (+) 660 WP_020997582.1 hypothetical protein -
  SCI_RS01270 (SCI_0252) dinB 236922..237989 (+) 1068 WP_020997583.1 DNA polymerase IV -
  SCI_RS01275 (SCI_0253) recD/recD2/recDB 238271..240625 (-) 2355 WP_020997584.1 ATP-dependent RecD-like DNA helicase Machinery gene
  SCI_RS01280 (SCI_0254) lepB 240854..241468 (-) 615 WP_006269005.1 signal peptidase I -
  SCI_RS01285 (SCI_0255) rnhC 241472..242362 (-) 891 WP_006269188.1 ribonuclease HIII -
  SCI_RS01290 - 242448..242753 (+) 306 WP_003070932.1 hypothetical protein -
  SCI_RS01295 (SCI_0256) - 242750..243298 (+) 549 WP_003070931.1 CvpA family protein -

Sequence

Protein


Download         Length: 784 a.a.        Molecular weight: 88556.59 Da        Isoelectric Point: 4.6573

>NTDB_id=50584 SCI_RS01275 WP_020997584.1 238271..240625(-) (recD/recD2/recDB) [Streptococcus constellatus subsp. pharyngis C1050]
MEFYFSGTIERIIFENPSSFFRILLLDIDDTDADFDNFEIIVTGTMADIMEGEDYTFWGNLVQHPKYGEQLKITRYERAK
PTSKGLVKYFSSDHFKGIGVKTAQKIVDLYGDNTIDKVLAEPEKLKDIAGLSAKNREAFIMKLRQNYGTERVLAKLSEYG
ISNKLAFQIHDFYKEETLEIVEHYPYQLVEDIQGIGFKIADQLAQSLGIESTAPERFRAGLLHTLLTQSMEKGDTYLEAK
ELLEHTIELLESSRQIELDPSSVADELAHLIEEDKVQNVDTKIFENSLFFAEEGICNNLLRILEKENQNKYEPEKIEAAL
THIEEEFAISYDAIQKQAICNAIQHKIFILTGGPGTGKTTVINGIIAVYALLHGLDLHKSQDLPILLAAPTGRAARRMNE
LTGLPSATIHRHLGMTGDDDTSHLDDYLDTDFIIVDEFSMVDTWLANQLLSNISSNSKLLIVGDADQLPSVSPGQVLADL
LKIPLLPQTKLEKIYRQSKDSTIVTLASQIQKGILPPDFIEKKADRSYFEARSEHIPQMIERIVEAAIRSGIPAQDVQVL
APMYRGQAGIDHINQLMQNLINPAETEQIIFEATDCQYRQGDKVIHLVNDAESNVFNGDLGYITDLLPAKYTDSKQDELT
INFDGNEIVYQRSEWYKIRLAYAMSIHKSQGSEFPVVILPITSSSHRMLQRNLIYTAITRAKSKLILLGEKSAFAFAVQN
TGTTRKTYLKERFEDFLNVEKVIHTSVDNLETTVGNYVLTEENFLKINPMIGITDEDIQNIFGE

Nucleotide


Download         Length: 2355 bp        

>NTDB_id=50584 SCI_RS01275 WP_020997584.1 238271..240625(-) (recD/recD2/recDB) [Streptococcus constellatus subsp. pharyngis C1050]
ATGGAATTTTACTTTTCAGGCACCATTGAACGCATTATTTTTGAAAATCCCAGCAGTTTCTTTCGGATTCTGCTGTTAGA
TATTGACGACACCGATGCCGATTTTGATAATTTTGAGATTATTGTCACAGGCACCATGGCGGATATTATGGAGGGCGAAG
ACTACACTTTTTGGGGAAATCTCGTGCAACACCCTAAATATGGAGAACAGCTTAAAATAACACGCTATGAGCGTGCAAAG
CCAACCAGCAAAGGCTTAGTCAAATATTTTTCAAGCGACCATTTTAAAGGGATTGGTGTAAAAACAGCACAAAAAATCGT
GGACCTCTATGGCGATAACACGATTGATAAGGTCTTAGCAGAGCCAGAAAAATTAAAGGATATTGCAGGGCTTTCTGCCA
AAAATCGCGAAGCTTTTATTATGAAACTAAGACAGAACTACGGTACCGAGCGAGTCCTTGCAAAGCTATCTGAATACGGC
ATTTCAAATAAGCTTGCCTTTCAGATTCACGATTTTTACAAAGAAGAGACTCTCGAAATTGTCGAACACTATCCTTACCA
ATTGGTAGAAGATATTCAAGGAATAGGATTTAAAATTGCCGACCAACTGGCACAAAGCTTAGGAATTGAAAGTACTGCTC
CAGAGCGTTTTCGTGCTGGGCTGCTTCACACACTCCTAACCCAGTCTATGGAAAAGGGTGACACTTATCTTGAAGCCAAA
GAACTTCTGGAACATACGATTGAACTCCTCGAAAGTTCCCGTCAGATTGAGTTAGACCCAAGTTCTGTTGCGGATGAGCT
GGCACATTTGATTGAAGAAGATAAAGTTCAAAATGTCGATACGAAGATTTTTGAAAACAGTCTCTTTTTTGCTGAAGAGG
GAATCTGCAACAATCTCTTACGCATTCTGGAGAAGGAAAATCAAAATAAATATGAACCGGAAAAAATCGAAGCTGCTCTT
ACTCACATTGAGGAAGAATTTGCTATTTCCTATGATGCTATCCAGAAACAAGCCATTTGCAATGCTATCCAGCACAAAAT
TTTCATCTTAACAGGTGGTCCTGGAACTGGAAAAACGACCGTTATCAATGGAATTATTGCTGTCTACGCTCTGCTACATG
GTCTGGATTTACACAAATCTCAAGATTTACCTATCCTTTTAGCAGCTCCGACTGGGCGTGCTGCCAGACGCATGAATGAA
TTAACAGGGCTTCCAAGCGCAACGATTCATCGGCATTTAGGCATGACAGGAGACGATGACACTAGCCATTTAGATGATTA
TTTGGACACAGACTTTATTATTGTCGACGAATTTTCAATGGTAGATACTTGGTTAGCCAATCAACTCCTCAGCAATATCT
CTTCCAACAGCAAACTTCTCATTGTCGGAGATGCTGATCAGCTGCCTTCTGTCAGCCCCGGACAAGTGCTGGCAGATTTA
CTGAAAATCCCTCTTCTTCCGCAGACCAAATTAGAAAAAATTTATCGACAAAGCAAAGACTCCACTATCGTCACCTTAGC
CAGTCAGATTCAAAAAGGCATTCTGCCACCTGATTTTATAGAAAAAAAGGCTGACCGTTCTTATTTTGAAGCGCGTAGTG
AACATATTCCGCAGATGATTGAACGTATTGTAGAAGCTGCTATCCGCAGTGGCATTCCAGCTCAAGATGTGCAGGTGCTT
GCGCCTATGTACCGCGGACAGGCTGGGATTGACCACATCAATCAACTCATGCAAAATCTAATCAACCCTGCCGAAACAGA
ACAAATCATTTTTGAAGCAACTGATTGTCAATATCGACAAGGCGACAAGGTCATTCATCTGGTCAATGATGCGGAAAGCA
ATGTGTTTAATGGTGATTTAGGCTATATCACCGATTTGCTACCAGCAAAATATACGGACTCTAAGCAGGACGAACTGACT
ATCAATTTCGACGGCAATGAGATTGTTTATCAACGCAGTGAATGGTACAAGATTCGTCTGGCATACGCTATGAGTATCCA
CAAATCTCAGGGCAGTGAATTTCCAGTCGTCATTTTACCGATTACGTCCAGCAGCCACCGCATGCTGCAACGCAATCTTA
TCTATACTGCTATCACCCGCGCCAAGAGCAAATTGATTCTTCTTGGGGAAAAGTCTGCCTTTGCTTTTGCTGTCCAAAAT
ACTGGGACAACACGTAAAACCTACCTGAAAGAGCGCTTTGAAGACTTTCTCAATGTAGAAAAAGTTATACACACTTCTGT
GGATAATTTGGAAACAACTGTGGGAAACTATGTCTTGACTGAGGAAAATTTCTTGAAAATCAATCCCATGATTGGAATAA
CGGATGAAGATATTCAGAACATTTTTGGAGAATAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(661-708)

Helix-hairpin-helix containing domain (HHH_RecD2)

(146-236)

AAA domain (AAA_30)

(331-528)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(573-643)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U2ZMF3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

41.555

95.153

0.395