Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   I1H34_RS18845 Genome accession   NZ_CP064923
Coordinates   4112583..4113671 (+) Length   362 a.a.
NCBI ID   WP_212662518.1    Uniprot ID   -
Organism   Acaryochloris marina S15     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4107583..4118671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I1H34_RS18820 (I1H34_18805) - 4107704..4108771 (+) 1068 WP_212662514.1 3-deoxy-7-phosphoheptulonate synthase -
  I1H34_RS18825 (I1H34_18810) - 4108785..4109603 (-) 819 WP_212662515.1 hypothetical protein -
  I1H34_RS18830 (I1H34_18815) - 4109759..4110145 (+) 387 WP_212662516.1 nuclear transport factor 2 family protein -
  I1H34_RS18835 (I1H34_18820) - 4110209..4110820 (-) 612 WP_249369388.1 hypothetical protein -
  I1H34_RS18840 (I1H34_18825) fumC 4110890..4112269 (-) 1380 WP_315874890.1 class II fumarate hydratase -
  I1H34_RS18845 (I1H34_18830) pilM 4112583..4113671 (+) 1089 WP_212662518.1 type IV pilus assembly protein PilM Machinery gene
  I1H34_RS18850 (I1H34_18835) - 4113676..4114422 (+) 747 WP_212662519.1 PilN domain-containing protein -
  I1H34_RS18855 (I1H34_18840) - 4114419..4115135 (+) 717 WP_212662520.1 type 4a pilus biogenesis protein PilO -
  I1H34_RS18860 (I1H34_18845) - 4115221..4117272 (+) 2052 WP_212662521.1 AMIN domain-containing protein -
  I1H34_RS18865 (I1H34_18850) rpe 4117426..4118133 (-) 708 WP_212662522.1 ribulose-phosphate 3-epimerase -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 39451.05 Da        Isoelectric Point: 4.1976

>NTDB_id=505663 I1H34_RS18845 WP_212662518.1 4112583..4113671(+) (pilM) [Acaryochloris marina S15]
MVTSLKSLFSNSNQGVGVELTPDSVNIVQLKQQKQGTNLNTFAAIPIPEGAFQDGRITDPDAIADALRQGITEHKIKAKT
AICAVPIGEAVIRLIRLPAELDEMELRDMVLNQEAAIYLPFPREEADVDFQRLGTDIDEDGIERVEVLLVATPKDITENY
LNVFQQAGLDLKVLEVSSFSLIRTLRNQLLQFMEGEAVALVNIDFDGTEISIVMDGIPQFNRKVPIGTHHLQNALSRAMN
LPGAMGADLLQGMTVPLDVTDNTANNPSSAAILRMLSDLSDELRRSIDFYLNQGENLDITQVFVSGPGASLGQIDEFLTQ
RLGLTTTLVDPISTLGIQNSDSIPMAQRPALSVVMGLGMREV

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=505663 I1H34_RS18845 WP_212662518.1 4112583..4113671(+) (pilM) [Acaryochloris marina S15]
GTGGTGACTTCATTAAAAAGTCTGTTTTCGAATTCGAATCAGGGGGTAGGCGTAGAGTTAACCCCGGACAGCGTGAATAT
CGTTCAACTTAAGCAACAAAAGCAGGGGACAAACCTCAATACTTTTGCGGCAATTCCTATTCCAGAAGGCGCTTTTCAAG
ATGGCCGGATTACTGATCCAGACGCCATTGCCGATGCCCTTCGTCAAGGAATTACAGAACATAAAATCAAAGCCAAAACT
GCTATATGTGCCGTTCCTATTGGTGAAGCTGTCATTCGGTTAATTCGTTTACCTGCCGAACTGGACGAAATGGAACTGCG
GGATATGGTTCTTAATCAAGAAGCAGCCATATATCTGCCCTTCCCTAGAGAAGAAGCAGATGTGGACTTTCAACGATTAG
GAACAGACATCGATGAGGATGGCATTGAGCGAGTAGAAGTTCTCCTCGTTGCTACGCCAAAGGACATTACTGAAAACTAC
CTCAATGTTTTCCAACAGGCAGGTCTAGATCTGAAGGTTCTAGAAGTCAGTAGCTTTTCCTTAATCAGAACCCTGCGAAA
TCAACTCCTCCAATTTATGGAAGGGGAAGCAGTGGCACTGGTGAATATTGATTTTGATGGTACTGAAATTAGTATCGTCA
TGGATGGTATTCCTCAATTTAATCGGAAGGTACCGATTGGCACTCATCATCTTCAAAATGCTTTGAGTCGGGCGATGAAT
TTGCCTGGAGCAATGGGGGCAGATTTATTGCAAGGGATGACCGTTCCTTTGGACGTCACAGACAACACTGCCAATAACCC
CAGCTCTGCTGCCATCCTGAGAATGTTAAGCGATTTATCAGACGAACTTCGCCGTTCCATCGACTTCTACTTAAACCAGG
GTGAAAATTTAGATATTACGCAAGTCTTTGTATCAGGGCCAGGGGCCAGTTTAGGACAAATTGATGAATTTTTAACCCAG
CGTTTAGGACTGACTACGACATTAGTCGATCCAATCAGTACGCTCGGCATTCAAAATTCAGATAGTATTCCGATGGCTCA
ACGTCCTGCGTTAAGTGTTGTTATGGGTCTTGGGATGCGGGAGGTATAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(17-361)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Synechocystis sp. PCC 6803

51.913

100

0.525