Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   I0K03_RS21535 Genome accession   NZ_CP064875
Coordinates   4250989..4253310 (-) Length   773 a.a.
NCBI ID   WP_200203404.1    Uniprot ID   -
Organism   Bacillus toyonensis strain P18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4245989..4258310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I0K03_RS21505 (I0K03_21505) - 4246460..4246636 (-) 177 WP_001242605.1 hypothetical protein -
  I0K03_RS21510 (I0K03_21510) - 4246722..4246913 (-) 192 WP_200203403.1 damage-inducible protein DinB -
  I0K03_RS21515 (I0K03_21515) - 4246993..4247325 (-) 333 Protein_4215 YrdB family protein -
  I0K03_RS21520 (I0K03_21520) - 4247559..4247999 (-) 441 WP_001266954.1 D-tyrosyl-tRNA(Tyr) deacylase -
  I0K03_RS21525 (I0K03_21525) relA 4248017..4250200 (-) 2184 WP_001262799.1 GTP diphosphokinase -
  I0K03_RS21530 (I0K03_21530) - 4250411..4250923 (-) 513 WP_000346217.1 adenine phosphoribosyltransferase -
  I0K03_RS21535 (I0K03_21535) recJ 4250989..4253310 (-) 2322 WP_200203404.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  I0K03_RS21540 (I0K03_21540) - 4253412..4254305 (-) 894 WP_000409731.1 cation diffusion facilitator family transporter -
  I0K03_RS21545 (I0K03_21545) secDF 4254470..4256734 (-) 2265 WP_001119093.1 protein translocase subunit SecDF -
  I0K03_RS21550 (I0K03_21550) - 4257017..4257301 (-) 285 WP_000890217.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 773 a.a.        Molecular weight: 87422.98 Da        Isoelectric Point: 5.1645

>NTDB_id=505562 I0K03_RS21535 WP_200203404.1 4250989..4253310(-) (recJ) [Bacillus toyonensis strain P18]
MLQPKTRWKEKEYNEERVSELAKKLQLSPLVISLFLGRGLDTEDKILDFLNTENQEFHDPFLLEGMDRTVERVNKAIQNG
EQILIFGDYDADGVSSTTVLYLALQELGAEVEFYIPNRFTEGYGPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKEL
GIDLIITDHHEPPPELPEALAIIHPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPEHLLEIAVIGTVADLVSLHGENRLL
VKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDATPAVHLLLSDDPEEAKELAEEIDELNKL
RKDIVKQITEEAIAEVENKFPPEENKVLVLAKEGWNPGVIGIVASKLVERFYRPTIVLSIDPVKETAKGSARSIAGFDLF
ANLSDCRELLPHFGGHPMAAGMTLHMNDVDELRRRLNAQADAILTEADFIPITAVDTFCKVEDVTLAAIEDMQKLAPFGV
GNPKPRLAVKNAELESIRAIGSDGSHLKMALRDGQATLDTIGFGFGAYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQ
DIAVEAWQLFDWRSMRNVEANLAELPKEKITMVYFSEEVLNKFSLEDYKEHLVHASGVTHLDDQYIVLLDLPKGTDELRD
LFKVGFPSRIYTLFYQENNHLFSTVPTREHFKWYYSFLNQKSPFSLRQYGEQLCRHKGWSKDTVNFMTQVFFELEFVTIK
DGVIFMAEQKQKRDLIESNTYREKMNHLQLEKELVYSTYQQLYTWFETIRNHK

Nucleotide


Download         Length: 2322 bp        

>NTDB_id=505562 I0K03_RS21535 WP_200203404.1 4250989..4253310(-) (recJ) [Bacillus toyonensis strain P18]
GTGTTACAACCGAAGACGCGTTGGAAAGAAAAAGAATATAATGAAGAGCGAGTGAGTGAATTAGCAAAAAAGTTACAACT
ATCACCACTTGTCATTTCGTTATTCCTCGGTAGAGGATTAGATACAGAAGATAAGATTTTAGATTTTTTAAATACAGAAA
ATCAAGAATTTCACGATCCGTTTTTATTAGAAGGAATGGATAGAACGGTAGAACGTGTAAATAAGGCGATTCAAAATGGA
GAGCAAATATTAATATTTGGTGATTATGATGCGGACGGAGTAAGTAGTACAACGGTTTTATATCTTGCTCTGCAAGAATT
AGGTGCAGAGGTAGAATTTTATATTCCAAACCGTTTTACAGAGGGTTATGGACCGAACGAAGAAGCGTTTCGTTGGGCGC
ATAGTGCAGGGTTCTCACTTATTATTACTGTCGATACTGGTATCGCAGCGGTACATGAAGCGAAGGTAGCGAAGGAACTT
GGAATAGATCTTATTATTACGGATCACCATGAGCCACCGCCAGAATTACCAGAAGCACTCGCGATTATTCATCCAAAACT
AGATGGCGGTGTGTATCCGTTTCATTATTTAGCCGGTGTAGGTGTTGCGTTTAAAGTTGCACATGCATTATTAGGTCGTG
TACCAGAACATTTATTAGAAATTGCAGTAATCGGTACGGTAGCCGATTTAGTATCACTTCATGGCGAAAATAGATTGCTA
GTGAAGCGCGGTTTAAAACATATGCGAATGACGAAAAATATTGGTTTAAAGGCATTGTTTAAAGTTGCTAACGTTTCGCA
AAGTGAAATTACAGAAGAAAGCATTGGATTCTCAATCGCACCGCGTATTAATGCAGTTGGGCGTTTAGAAGATGCTACGC
CGGCTGTACACCTATTATTATCAGATGACCCAGAGGAAGCGAAAGAACTGGCTGAAGAAATTGATGAGCTGAACAAACTT
CGAAAAGATATTGTAAAGCAAATTACAGAAGAGGCTATCGCTGAAGTGGAAAATAAATTCCCGCCAGAAGAAAATAAAGT
GTTAGTGCTTGCAAAAGAAGGCTGGAATCCAGGTGTAATTGGAATTGTCGCTTCTAAATTAGTTGAACGTTTTTATCGTC
CAACAATTGTATTAAGCATTGATCCTGTCAAAGAAACAGCAAAGGGTTCAGCACGTAGTATCGCGGGATTTGATTTGTTT
GCAAACTTGTCGGATTGTAGAGAGTTATTACCGCACTTCGGAGGGCATCCGATGGCCGCGGGAATGACGCTACATATGAA
TGATGTAGATGAGTTACGTCGCCGCTTAAATGCGCAAGCGGATGCAATTTTAACAGAAGCGGATTTTATTCCAATCACAG
CAGTTGATACATTTTGTAAAGTGGAAGATGTAACGCTTGCAGCAATTGAGGATATGCAAAAGTTAGCGCCATTTGGTGTT
GGAAATCCGAAACCACGTCTTGCAGTGAAAAATGCTGAATTAGAAAGTATTCGTGCAATCGGATCAGATGGTTCACATTT
AAAAATGGCACTTCGTGACGGACAGGCAACACTGGATACAATTGGATTCGGATTTGGTGCGTATGCAAAAGAAATTTCTC
CAGTTGCTAAGGTATCTGTAATAGGAGAGGCATCCATTAATGAATGGAATAATTTTAAGAAGCCACAATTAATGGTACAA
GATATTGCTGTAGAGGCATGGCAATTATTTGATTGGCGTAGTATGCGTAATGTGGAAGCAAATTTAGCAGAACTTCCGAA
AGAAAAAATAACAATGGTGTATTTTTCTGAAGAGGTATTGAATAAGTTTTCTTTAGAAGACTATAAAGAACATCTTGTGC
ATGCATCAGGGGTAACTCATTTAGATGATCAATACATCGTGTTACTCGATTTGCCAAAAGGAACAGATGAATTGCGTGAT
TTATTTAAAGTAGGATTCCCATCTAGAATCTATACGTTATTTTATCAAGAGAACAATCATCTATTTAGTACAGTCCCAAC
GAGGGAACATTTTAAATGGTACTATTCTTTCTTAAACCAAAAATCACCATTTTCTTTAAGACAATATGGGGAACAACTAT
GTCGCCATAAAGGTTGGTCAAAAGATACAGTAAATTTCATGACACAGGTGTTTTTTGAGTTAGAATTTGTTACAATAAAA
GACGGTGTCATTTTTATGGCCGAACAAAAACAAAAGCGTGATTTAATTGAATCGAACACATATCGTGAGAAAATGAACCA
CTTACAATTAGAAAAAGAATTGGTTTATAGCACATATCAGCAACTATATACATGGTTTGAAACGATTCGTAATCATAAAT
AA

Domains

Predicted by InterproScan.

RecJ OB domain (RecJ_OB)

(456-561)

DHHA1 domain (DHHA1)

(315-438)

DHH family (DHH)

(82-226)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-766)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

52.584

100

0.527