Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   I0K03_RS21455 Genome accession   NZ_CP064875
Coordinates   4233095..4235431 (-) Length   778 a.a.
NCBI ID   WP_000528056.1    Uniprot ID   -
Organism   Bacillus toyonensis strain P18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4228095..4240431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I0K03_RS21430 (I0K03_21430) - 4230753..4231097 (+) 345 WP_000209543.1 PH domain-containing protein -
  I0K03_RS21435 (I0K03_21435) - 4231140..4232207 (-) 1068 WP_000793111.1 AI-2E family transporter -
  I0K03_RS21440 (I0K03_21440) - 4232384..4232596 (+) 213 WP_000242555.1 hypothetical protein -
  I0K03_RS21445 (I0K03_21445) - 4232632..4232760 (-) 129 WP_001053553.1 YrzQ family protein -
  I0K03_RS21450 (I0K03_21450) - 4232779..4232967 (-) 189 WP_000469281.1 hypothetical protein -
  I0K03_RS21455 (I0K03_21455) recD2 4233095..4235431 (-) 2337 WP_000528056.1 ATP-dependent RecD-like DNA helicase Machinery gene
  I0K03_RS21460 (I0K03_21460) - 4235539..4236198 (-) 660 WP_000066402.1 tetratricopeptide repeat protein -
  I0K03_RS21465 (I0K03_21465) mnmA 4236309..4237424 (-) 1116 WP_098709709.1 tRNA 2-thiouridine(34) synthase MnmA -
  I0K03_RS21470 (I0K03_21470) - 4237441..4238586 (-) 1146 WP_000439900.1 cysteine desulfurase family protein -
  I0K03_RS21475 (I0K03_21475) cymR 4238622..4239038 (-) 417 WP_000704116.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87374.99 Da        Isoelectric Point: 5.2027

>NTDB_id=505561 I0K03_RS21455 WP_000528056.1 4233095..4235431(-) (recD2) [Bacillus toyonensis strain P18]
MGNQHAMDLFEEEKKFIKAQVLHTIFHNEENLYSVVSMKIIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYLVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPDALNGVVNKQKAQEIYETIVEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYQLIEEVDGIGFGRADDIGRALGISGNHDDRVRAGCFYTLENVS
LQLGHVYMGKDQLVRETMSLLNNQEGRVTEEDIIGCVEMMQSEGKVIIEEERVYLASLFYSEKGVVKSIRRLMNQEETPS
FPEAEMLKTLGEIEEQLKVQYAPFQQEAIQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGVSLNLNEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAIPTVKLTEIYRQAEGSSVIQLAHAIKDGTLPPDLAQNKKDRSFISCAGAQIVEVVKKVC
ENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQEVFNPKKEKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYYRMLRRNLIYTGITRSKKF
LIICGEEAAFQSGVNRLDDAMRQTTLAGRLQESQGEVQMVTVNGEEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=505561 I0K03_RS21455 WP_000528056.1 4233095..4235431(-) (recD2) [Bacillus toyonensis strain P18]
ATGGGAAATCAACATGCCATGGATTTGTTTGAGGAAGAGAAAAAATTTATAAAAGCGCAAGTTCTTCATACCATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAATCATTGAAACGAATGAAACATACGACGAAAAAAAAGTAATGA
TAAACGGTCATTTTCCCCGTATGCATGAAGATGAAGTGTTTACATTAACAGGTCATTTTAAAGACCACCCGAAGTATGGG
AAACAATATTTAGTTGAAACGTTTAAGAAAGAATTGCCGCAAACAAAAGCAGGTATGGTGCAATATTTAGCGAGCGATTT
ATTTAAAGGGATTGGAAAGCGTACGGCTGAAAAAATCGTAGATCACCTTGGTGAGCATGCCATTTCTAAAATTATGGATG
ATCCTGATGCGTTAAATGGTGTTGTTAACAAACAAAAAGCACAGGAAATATATGAGACAATTGTGGAGCATCAAGGGTTA
GAGAAAGTAATGAGCTTTTTAAATGGTTACGGTTTTGGAACGAAGCTTTCTATTAAAATTTATCAGCAATATAAAGAAAT
GACATTAGAAGTGATTCGTAATAATCCATATCAACTTATTGAAGAAGTGGACGGGATTGGTTTTGGACGAGCAGATGATA
TAGGACGTGCGTTAGGTATATCGGGTAATCATGATGACCGTGTACGTGCGGGATGTTTTTATACGTTAGAGAATGTTTCA
CTGCAGCTCGGCCACGTTTATATGGGGAAAGATCAACTTGTAAGAGAAACGATGTCACTTTTAAATAATCAAGAAGGTAG
AGTGACTGAGGAAGACATTATAGGCTGTGTTGAAATGATGCAAAGTGAAGGGAAAGTCATCATTGAAGAAGAACGAGTGT
ACTTAGCATCGTTATTTTACTCTGAAAAAGGTGTTGTAAAGTCTATTCGTAGGCTTATGAATCAAGAGGAAACCCCTTCA
TTTCCTGAAGCAGAAATGTTAAAAACATTAGGTGAAATTGAAGAACAGCTGAAGGTGCAGTATGCACCGTTTCAGCAAGA
AGCAATTCAAACGGCACTTCATAAGCCGATGATGTTATTGACAGGTGGACCAGGAACGGGGAAAACAACAGTTATTAAAG
GAATTGTTGAAATGTACGCGTCCTTGCATGGGGTATCATTAAATCTGAATGAATACAGTGATGATAATCCATTTCCAATA
TTATTAACGGCTCCAACAGGAAGAGCAGCGAAGCGAATGAGTGAATCTACCGGGCTCCCTGCTTGTACAATTCATCGTCT
GCTTGGTTGGACGCCAGAAGGGTCTTTCCAGCGTAATGAAACCGATCCAGTTCAAGGGAAGTTACTCATTATTGATGAGT
TTTCGATGGTAGATATTTGGCTTGCAAATCAGCTATTCAAGTCACTTCCGACAAATATTCAAGTTATCGTTGTAGGTGAT
GAAGATCAGTTGCCATCTGTAGGACCTGGACAAGTGTTAAAAGATTTATTAAATGCAGGAGCCATTCCAACGGTAAAACT
TACAGAAATTTATCGTCAGGCGGAAGGTTCGTCTGTTATTCAGCTTGCCCATGCGATAAAAGACGGAACACTTCCACCGG
ATTTAGCGCAAAATAAAAAAGATCGTTCATTTATCAGCTGTGCAGGGGCTCAAATTGTTGAAGTTGTAAAAAAAGTATGT
GAAAACGCGAAGACGAAAGGGTTTAGCGCAAGAGATGTCCAAGTGTTGGCACCTATGTACCGCGGACCAGCAGGTATTAA
TGTGTTAAATGAAGCTCTTCAAGAAGTGTTTAATCCGAAAAAAGAAAAAAGTAAAGAAATTGCCTACGGTGACGTTGTGT
ATCGAAGAGGTGATAAAGTACTTCAATTAGTCAATCAGCCGGAAAGCCAAGTATTTAATGGTGATATTGGAGAAATTGTT
TCGGTGTTTTATGCAAAAGAAAATGTTGAGCAACAGGACATGATTATCGTTTCATTTGATGGAATCGAAGTAACGTATAC
AAAGCCGGATTTAAATCAAATTACCCATGCATATTGCTGCTCGATTCATAAATCACAAGGTAGTGAATTTCCAATAGTTA
TTATGCCGATTGTAAAGAGCTACTACCGTATGTTACGTCGTAATTTAATTTACACGGGCATTACAAGAAGTAAGAAATTC
CTTATTATTTGTGGGGAGGAAGCGGCTTTTCAATCCGGTGTAAATCGCCTTGACGATGCAATGCGTCAAACGACTTTAGC
TGGTCGTTTGCAAGAATCACAAGGAGAGGTGCAGATGGTAACGGTTAATGGCGAGGAAATGGACGTGGAAAACATTTCAC
CGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

AAA domain (AAA_30)

(341-548)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

57.143

100

0.581