Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   IXK98_RS09150 Genome accession   NZ_CP064858
Coordinates   123875..124576 (+) Length   233 a.a.
NCBI ID   WP_171381653.1    Uniprot ID   A0AAE7AYM8
Organism   Vibrio europaeus strain 07/118 T2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 118875..129576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IXK98_RS09135 (IXK98_09135) - 120012..122336 (+) 2325 WP_195877323.1 Tex family protein -
  IXK98_RS09140 (IXK98_09140) - 122429..122899 (-) 471 WP_171381651.1 ATP-dependent Lon protease -
  IXK98_RS09145 (IXK98_09145) bioH 123021..123815 (-) 795 WP_195877324.1 pimeloyl-ACP methyl ester esterase BioH -
  IXK98_RS09150 (IXK98_09150) comF 123875..124576 (+) 702 WP_171381653.1 phosphoribosyltransferase family protein Machinery gene
  IXK98_RS09155 (IXK98_09155) nfuA 124663..125250 (+) 588 WP_069667733.1 Fe-S biogenesis protein NfuA -
  IXK98_RS09160 (IXK98_09160) nudE 125422..125967 (+) 546 WP_171381654.1 ADP compounds hydrolase NudE -
  IXK98_RS09165 (IXK98_09165) cysQ 126029..126856 (+) 828 WP_171802306.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  IXK98_RS09170 (IXK98_09170) recG 127128..129206 (-) 2079 WP_171802307.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26595.08 Da        Isoelectric Point: 8.6036

>NTDB_id=505373 IXK98_RS09150 WP_171381653.1 123875..124576(+) (comF) [Vibrio europaeus strain 07/118 T2]
MLTQRVVKYIADLLPMHCEVCHLALTKPHPPSGICDHCSRYFAPIPRCQRCGLPTPFDIAECGECLKHPPKWQRLYCVAD
YQPPLAQYVHRLKYERQFWQARKLANLLAPRIENPAQVITFVPLHWGRYLRRGFNQSELIACSLARQLNVPCQSLFKRVR
ATPQQQGLTKAERKRNLDRAFLLNGEIVADHIAIVDDVLTTGSTVQHLCELLLEAGVKSVDIYCICRTPEPAS

Nucleotide


Download         Length: 702 bp        

>NTDB_id=505373 IXK98_RS09150 WP_171381653.1 123875..124576(+) (comF) [Vibrio europaeus strain 07/118 T2]
ATGTTAACTCAAAGGGTAGTGAAATACATCGCCGACCTGTTGCCTATGCATTGCGAGGTTTGCCATCTTGCGTTGACCAA
ACCACATCCACCTAGTGGTATTTGCGATCATTGCTCGCGTTACTTCGCGCCTATTCCTCGTTGCCAGCGCTGCGGTTTGC
CCACTCCTTTTGATATAGCAGAGTGCGGAGAATGTCTTAAACATCCGCCTAAATGGCAGCGGCTCTATTGTGTTGCTGAC
TATCAACCGCCACTTGCGCAATATGTTCATCGACTTAAGTACGAACGGCAATTTTGGCAGGCGCGTAAACTCGCGAATCT
GCTCGCCCCCAGAATAGAAAATCCCGCACAGGTCATCACGTTTGTGCCCCTGCATTGGGGGCGATATCTAAGGCGCGGAT
TTAATCAGAGCGAGTTGATAGCATGCTCACTGGCGCGGCAACTCAACGTACCGTGCCAGTCCCTGTTTAAAAGAGTGAGA
GCAACACCTCAGCAGCAAGGTTTAACTAAGGCAGAGCGAAAGCGAAATCTAGACCGTGCTTTCTTACTCAATGGAGAGAT
TGTTGCTGACCATATCGCGATTGTTGATGATGTTCTCACTACTGGAAGTACGGTGCAGCATTTATGCGAATTACTGCTTG
AAGCAGGGGTGAAAAGCGTTGATATTTACTGCATCTGCCGTACTCCTGAGCCAGCAAGTTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

55.172

99.571

0.549
  comF Vibrio campbellii strain DS40M4

48.333

100

0.498