Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   SII_RS07425 Genome accession   NC_022237
Coordinates   1522290..1523078 (-) Length   262 a.a.
NCBI ID   WP_003074456.1    Uniprot ID   T1ZG52
Organism   Streptococcus intermedius C270     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1517290..1528078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SII_RS07405 (SII_1457) gatA 1517758..1519224 (-) 1467 WP_020999073.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  SII_RS07410 (SII_1458) gatC 1519224..1519526 (-) 303 WP_020999074.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  SII_RS07415 (SII_1459) aspS 1519591..1521339 (-) 1749 WP_020999075.1 aspartate--tRNA ligase -
  SII_RS07420 (SII_1460) - 1521715..1522290 (-) 576 WP_020999076.1 cysteine hydrolase family protein -
  SII_RS07425 (SII_1461) codY 1522290..1523078 (-) 789 WP_003074456.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  SII_RS07430 (SII_1462) - 1523240..1524454 (-) 1215 WP_020999077.1 pyridoxal phosphate-dependent aminotransferase -
  SII_RS07435 (SII_1463) - 1524607..1525059 (+) 453 WP_003028799.1 universal stress protein -
  SII_RS07440 (SII_1464) - 1525105..1526493 (-) 1389 WP_009569304.1 Cof-type HAD-IIB family hydrolase -
  SII_RS07445 (SII_1465) - 1526558..1527520 (+) 963 WP_020999078.1 asparaginase -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29694.03 Da        Isoelectric Point: 5.0797

>NTDB_id=50536 SII_RS07425 WP_003074456.1 1522290..1523078(-) (codY) [Streptococcus intermedius C270]
MANLLAKTRKITSILRRSDERLQDELPYNAITQQLAEIMDCNACIVNSKGRLLGYFMRYKTNNDRVEAFYQTKIFPEEYV
RTANLMYDTEANLPVNHDLSIFPIEAKDEFPDGLTTISPIHVSGIRLGTLIVWRNDKEFDDDDLILVEIASTVVGIQLLN
FQREEDEKNIRRRTAVTMAVNTLSYSELRAVSAILGELSGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIPDIFEEIKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=50536 SII_RS07425 WP_003074456.1 1522290..1523078(-) (codY) [Streptococcus intermedius C270]
ATGGCAAACTTATTAGCAAAAACAAGAAAAATAACATCTATTTTGCGTCGTTCAGATGAGCGGTTGCAGGATGAACTACC
TTATAATGCAATTACCCAACAATTAGCTGAAATTATGGATTGCAATGCTTGTATTGTAAATAGCAAGGGTCGTCTTTTGG
GGTATTTCATGCGCTACAAGACAAACAATGATCGTGTGGAAGCATTTTATCAAACGAAAATCTTCCCAGAAGAGTATGTT
CGCACCGCAAATTTGATGTATGATACTGAGGCCAATCTTCCAGTCAATCATGATTTATCTATTTTTCCTATTGAGGCAAA
AGATGAATTTCCAGATGGCTTGACGACAATTTCACCGATTCATGTTTCTGGGATTCGTTTAGGGACATTGATTGTTTGGC
GCAATGATAAAGAATTTGACGATGATGATTTGATCTTGGTTGAAATTGCAAGTACAGTGGTTGGTATTCAGCTACTCAAC
TTCCAACGAGAAGAAGATGAAAAAAATATTCGACGTCGAACAGCTGTAACTATGGCTGTAAATACTTTGTCTTATTCAGA
ATTACGAGCTGTTTCTGCTATTTTAGGTGAATTAAGCGGCAATGAAGGGCAGCTAACAGCTTCAGTGATTGCAGATCGTA
TTGGCATTACGCGCTCAGTGATTGTCAATGCTCTACGTAAACTAGAAAGTGCAGGCATTATCGAAAGTCGTTCTCTAGGA
ATGAAAGGAACCTATCTTAAAGTTCTTATCCCTGATATTTTTGAAGAGATTAAAAAGCGAGATTACTGA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB T1ZG52

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

61.832

100

0.618
  codY Bacillus subtilis subsp. subtilis str. 168

50

93.893

0.469

Multiple sequence alignment