Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   LLDRC3_RS01130 Genome accession   NZ_CP064835
Coordinates   201519..202307 (+) Length   262 a.a.
NCBI ID   WP_003129722.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain DRC3     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 196519..207307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLDRC3_RS01105 (LLDRC3_0207) - 197061..197667 (+) 607 Protein_208 DNA/RNA non-specific endonuclease -
  LLDRC3_RS01110 (LLDRC3_0208) - 197844..198053 (+) 210 WP_010905160.1 hypothetical protein -
  LLDRC3_RS01115 (LLDRC3_0209) - 198065..198304 (+) 240 WP_010905161.1 hypothetical protein -
  LLDRC3_RS01120 (LLDRC3_0210) - 198500..200083 (+) 1584 WP_063283612.1 APC family permease -
  LLDRC3_RS01125 (LLDRC3_0211) - 200152..201366 (+) 1215 WP_003129721.1 pyridoxal phosphate-dependent aminotransferase -
  LLDRC3_RS01130 (LLDRC3_0212) codY 201519..202307 (+) 789 WP_003129722.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  LLDRC3_RS01135 (LLDRC3_0213) gatC 202816..203121 (+) 306 WP_010905163.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  LLDRC3_RS01140 (LLDRC3_0214) gatA 203121..204581 (+) 1461 WP_010905164.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  LLDRC3_RS01145 (LLDRC3_0215) - 204585..205187 (+) 603 WP_023163651.1 NUDIX hydrolase N-terminal domain-containing protein -
  LLDRC3_RS01150 (LLDRC3_0216) gatB 205227..206660 (+) 1434 WP_010905166.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29128.46 Da        Isoelectric Point: 4.5254

>NTDB_id=505079 LLDRC3_RS01130 WP_003129722.1 201519..202307(+) (codY) [Lactococcus lactis subsp. lactis strain DRC3]
MATLLEKTRKITAILQDGVTDLQQELPYNSMTERLANVIDCNACVINTKGELLGYSLPYNTNNDRVDQFFYDRKLPDEYV
RAAVRIYDTMANVPVDRPLAIFPEESLGDFPKGVTTLAPIYGSGMRLGTFIMWREDGEFTDDDLVLVELATTVIGVQLSN
LKLEQMEENIRKDTMATMAVNTLSYSEMKAVKAIIEELDGEEGHVIASVIADKIGITRSVIVNALRKLESAGVIESRSLG
MKGTYLKVLNTGLFDKLAGRNF

Nucleotide


Download         Length: 789 bp        

>NTDB_id=505079 LLDRC3_RS01130 WP_003129722.1 201519..202307(+) (codY) [Lactococcus lactis subsp. lactis strain DRC3]
GTGGCTACATTACTTGAAAAAACACGTAAAATCACCGCGATTTTGCAAGATGGAGTGACCGATTTGCAACAAGAGTTGCC
ATATAACAGTATGACTGAACGCTTGGCAAACGTCATTGATTGCAATGCATGTGTGATTAATACGAAGGGCGAGTTGCTTG
GTTACTCATTGCCTTATAATACAAACAATGACCGTGTTGACCAATTTTTCTATGATCGTAAATTGCCTGATGAATATGTT
CGTGCGGCAGTACGTATCTACGATACAATGGCAAACGTTCCTGTTGACCGTCCATTAGCAATCTTCCCAGAAGAAAGCCT
TGGCGATTTTCCAAAAGGTGTGACAACTTTAGCACCTATTTATGGTTCTGGAATGCGTTTGGGAACATTTATCATGTGGC
GTGAAGACGGCGAATTCACTGATGATGATTTGGTCTTAGTTGAACTTGCAACAACAGTAATTGGTGTTCAACTCTCAAAT
CTTAAACTTGAACAAATGGAAGAAAATATCCGTAAAGACACCATGGCAACTATGGCTGTTAACACACTTTCATATTCAGA
AATGAAAGCTGTTAAAGCAATCATTGAAGAGCTTGATGGTGAAGAAGGGCATGTTATCGCTTCTGTCATTGCTGACAAGA
TTGGGATTACACGTTCAGTCATCGTTAACGCTTTGCGTAAACTCGAATCTGCTGGTGTAATTGAATCACGTTCACTTGGT
ATGAAAGGAACTTATCTTAAAGTTCTTAATACTGGTTTATTTGATAAACTTGCAGGACGTAATTTCTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(201-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

100

100

1
  codY Bacillus subtilis subsp. subtilis str. 168

47.638

96.947

0.462