Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | HPSH169_RS00095 | Genome accession | NC_017740 |
| Coordinates | 11804..12067 (+) | Length | 87 a.a. |
| NCBI ID | WP_000584955.1 | Uniprot ID | K7YLH7 |
| Organism | Helicobacter pylori Shi169 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 6804..17067
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPSH169_RS00070 (HPSH169_00045) | groES | 7099..7455 (-) | 357 | WP_000671957.1 | co-chaperone GroES | - |
| HPSH169_RS00075 (HPSH169_00050) | dnaG | 7730..9409 (+) | 1680 | WP_000601611.1 | DNA primase | - |
| HPSH169_RS00080 (HPSH169_00055) | - | 9406..10458 (+) | 1053 | WP_000802574.1 | MnmA/TRMU family protein | - |
| HPSH169_RS00085 (HPSH169_00065) | - | 10550..11377 (+) | 828 | WP_001154882.1 | DUF5718 family protein | - |
| HPSH169_RS00090 (HPSH169_00070) | comB2 | 11523..11804 (+) | 282 | WP_001272686.1 | TrbC/VirB2 family protein | Machinery gene |
| HPSH169_RS00095 (HPSH169_00075) | comB3 | 11804..12067 (+) | 264 | WP_000584955.1 | hypothetical protein | Machinery gene |
| HPSH169_RS00100 (HPSH169_00080) | comB4 | 12069..14432 (+) | 2364 | WP_000890542.1 | VirB4 family type IV secretion/conjugal transfer ATPase | Machinery gene |
| HPSH169_RS00105 (HPSH169_00085) | - | 14663..16093 (+) | 1431 | WP_195182682.1 | COG3014 family protein | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 10048.12 Da Isoelectric Point: 9.5507
>NTDB_id=50506 HPSH169_RS00095 WP_000584955.1 11804..12067(+) (comB3) [Helicobacter pylori Shi169]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA
Nucleotide
Download Length: 264 bp
>NTDB_id=50506 HPSH169_RS00095 WP_000584955.1 11804..12067(+) (comB3) [Helicobacter pylori Shi169]
ATGATTATCCTGTCAGCGAGCGTGAAGAATCTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAATC
TTATTTGATTTCTGTTTTTGCACCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCACTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGTAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG
ATGATTATCCTGTCAGCGAGCGTGAAGAATCTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAATC
TTATTTGATTTCTGTTTTTGCACCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCACTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGTAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
97.701 |
100 |
0.977 |