Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HPSH417_RS00090 Genome accession   NC_017739
Coordinates   11806..12069 (+) Length   87 a.a.
NCBI ID   WP_000584942.1    Uniprot ID   -
Organism   Helicobacter pylori Shi417     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6806..17069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPSH417_RS00065 (HPSH417_00040) groES 7101..7457 (-) 357 WP_000671941.1 co-chaperone GroES -
  HPSH417_RS00070 (HPSH417_00045) dnaG 7732..9411 (+) 1680 WP_000601345.1 DNA primase -
  HPSH417_RS00075 (HPSH417_00050) - 9408..10460 (+) 1053 WP_000802574.1 MnmA/TRMU family protein -
  HPSH417_RS00080 (HPSH417_00060) - 10552..11379 (+) 828 WP_001154882.1 DUF5718 family protein -
  HPSH417_RS00085 (HPSH417_00065) comB2 11525..11806 (+) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  HPSH417_RS00090 (HPSH417_00070) comB3 11806..12069 (+) 264 WP_000584942.1 hypothetical protein Machinery gene
  HPSH417_RS00095 (HPSH417_00075) comB4 12071..14434 (+) 2364 WP_000890544.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HPSH417_RS00100 (HPSH417_00080) - 14694..16082 (+) 1389 WP_228921249.1 COG3014 family protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10062.15 Da        Isoelectric Point: 9.5507

>NTDB_id=50484 HPSH417_RS00090 WP_000584942.1 11806..12069(+) (comB3) [Helicobacter pylori Shi417]
MIILSASVKNLREISVKEKFLWLNAKSYLISIFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=50484 HPSH417_RS00090 WP_000584942.1 11806..12069(+) (comB3) [Helicobacter pylori Shi417]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGTTGAACGCTAAGTC
TTATTTGATTTCTATTTTTGCGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

96.552

100

0.966

Multiple sequence alignment