Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   KQ252_RS10240 Genome accession   NZ_CP076801
Coordinates   2132985..2134250 (-) Length   421 a.a.
NCBI ID   WP_001285409.1    Uniprot ID   A0ABX6CPG9
Organism   Acinetobacter baumannii strain UC25604     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2127985..2139250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ252_RS10210 (KQ252_10190) pncA 2128206..2128850 (-) 645 WP_001985076.1 bifunctional nicotinamidase/pyrazinamidase -
  KQ252_RS10215 (KQ252_10195) dapA 2129180..2130073 (+) 894 WP_000193600.1 4-hydroxy-tetrahydrodipicolinate synthase -
  KQ252_RS10220 (KQ252_10200) - 2130089..2130691 (+) 603 WP_001177091.1 hypothetical protein -
  KQ252_RS10225 (KQ252_10205) purC 2130729..2131448 (+) 720 WP_000917863.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  KQ252_RS10230 (KQ252_10210) - 2131641..2131844 (+) 204 WP_000418559.1 hypothetical protein -
  KQ252_RS10235 (KQ252_10215) - 2132130..2132969 (+) 840 WP_000349494.1 formate/nitrite transporter family protein -
  KQ252_RS10240 (KQ252_10220) rarA 2132985..2134250 (-) 1266 WP_001285409.1 replication-associated recombination protein A Machinery gene
  KQ252_RS10245 (KQ252_10225) - 2134356..2135529 (-) 1174 Protein_2002 PQQ-dependent sugar dehydrogenase -
  KQ252_RS10250 (KQ252_10230) - 2135639..2136097 (-) 459 WP_000102817.1 YcgN family cysteine cluster protein -
  KQ252_RS10255 (KQ252_10235) - 2136292..2136450 (+) 159 WP_000490267.1 DUF1328 domain-containing protein -
  KQ252_RS10260 (KQ252_10240) - 2136622..2137359 (+) 738 WP_000100767.1 dienelactone hydrolase family protein -
  KQ252_RS10265 (KQ252_10245) - 2137545..2137907 (+) 363 WP_000130110.1 HIT family protein -
  KQ252_RS10270 (KQ252_10250) mutY 2138048..2139082 (+) 1035 WP_001113878.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46932.60 Da        Isoelectric Point: 5.8354

>NTDB_id=504773 KQ252_RS10240 WP_001285409.1 2132985..2134250(-) (rarA) [Acinetobacter baumannii strain UC25604]
MSDTHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIALLLAQAIDRPFVSLSALNTGV
KELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQT
LLNNALQNDKFLKERYIHIEEYDALLQFAAGDARKALNLLDLIASTFEPEVENTITNAVVVKVAQQNIARYDKSGEQHYD
LVSAFIKSIRGSDPDAALYWMARMLKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAVGMPEARIILGQTA
VYLATSAKSNSTYLAINKALELAEKTANLPVPLHLRNAPTKLMKQQGYGINYLYPHDYPEHFVLQDYLPPELKGTKLYES
ARNKREVEGERLQQRRWQQEQ

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=504773 KQ252_RS10240 WP_001285409.1 2132985..2134250(-) (rarA) [Acinetobacter baumannii strain UC25604]
ATGTCAGACACCCATATTCCACTTCCTGAACGCCTGCGCCCGAGAGACTTGTCTGAAATTATTGGGCAAGATCATTTGTT
AGGTGAACATGCACCCTTACGTCAAATGATTGATCAGGGACATTTGCCCTCTATTATTTTTTGGGGGCCGCCAGGCGTCG
GTAAAACGACAATTGCTTTGCTTTTAGCTCAGGCAATAGATCGTCCATTTGTGAGCTTATCTGCGCTGAATACGGGCGTA
AAAGAATTACGTGAAGTGATTGCAGAAAGTGGTGACTTACTGACCCCTGTAGTTTTTATTGACGAAATCCATCGCTTTAA
TAAATCACAGCAAGATGCATTATTAGGTGCCGTAGAAAAAGGTAAAATTACCTTAATTGGCGCCACCACTGAAAACCCGT
CTTTTGAAGTTAATAGTGCGCTTTTATCGCGTTGTCAGGTCTATACCTTAAACAGTTTAGATAGTGAAGCAATTCAGACG
CTACTTAACAATGCACTCCAAAACGATAAATTTTTAAAAGAACGCTATATTCATATTGAAGAGTATGATGCTCTTTTACA
GTTTGCAGCAGGTGATGCTCGTAAAGCACTCAATTTACTTGACTTAATTGCAAGTACTTTTGAGCCCGAAGTTGAAAATA
CCATTACCAATGCGGTTGTAGTAAAAGTCGCTCAGCAAAATATTGCGCGTTATGACAAATCGGGTGAACAGCATTACGAC
CTCGTTTCTGCCTTTATCAAATCGATTCGTGGTAGTGATCCGGATGCGGCTTTGTACTGGATGGCACGGATGCTTAAAGG
CGGGGAAGATCCAGTTTTTATTGCAAGACGTATGTTGATTGCCGCTTCAGAAGACATTGGAAACTCGAATCCAAATGCAC
TATTGCTTGCAGGTGAATGTTTCCGTTCTGTACAGGCGGTGGGAATGCCTGAGGCTCGAATTATTTTGGGTCAAACAGCA
GTTTATTTAGCGACCAGTGCAAAAAGTAATAGTACTTACCTCGCGATTAATAAGGCCTTAGAACTTGCTGAGAAAACGGC
AAATTTACCAGTACCTTTACACTTGAGAAATGCGCCAACCAAACTGATGAAACAGCAAGGTTATGGGATTAATTATCTCT
ATCCTCATGACTACCCTGAGCACTTTGTACTGCAAGATTATTTGCCGCCTGAGTTAAAGGGAACCAAACTCTATGAGTCG
GCAAGAAACAAGCGTGAAGTTGAAGGTGAACGCCTACAACAACGCAGATGGCAGCAGGAACAATAG

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(45-147)

AAA C-terminal domain (AAA_assoc_2)

(181-250)

MgsA AAA+ ATPase C terminal (MgsA_C)

(251-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

40.75

95.012

0.387