Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   SII_RS01185 Genome accession   NC_022237
Coordinates   235126..237480 (-) Length   784 a.a.
NCBI ID   WP_020998279.1    Uniprot ID   -
Organism   Streptococcus intermedius C270     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 230126..242480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SII_RS01170 (SII_0232) - 230323..231099 (-) 777 WP_020998276.1 threonine/serine exporter family protein -
  SII_RS01175 (SII_0233) pflB 231200..233515 (-) 2316 WP_020998277.1 formate C-acetyltransferase -
  SII_RS01180 (SII_0234) dinB 233847..234911 (+) 1065 WP_020998278.1 DNA polymerase IV -
  SII_RS01185 (SII_0235) recD/recD2/recDB 235126..237480 (-) 2355 WP_020998279.1 ATP-dependent RecD-like DNA helicase Machinery gene
  SII_RS01190 (SII_0236) lepB 237706..238320 (-) 615 WP_020998280.1 signal peptidase I -
  SII_RS01195 (SII_0237) rnhC 238332..239213 (-) 882 WP_020998281.1 ribonuclease HIII -
  SII_RS01200 - 239299..239604 (+) 306 WP_003074635.1 hypothetical protein -
  SII_RS01205 (SII_0238) - 239601..240149 (+) 549 WP_020998282.1 CvpA family protein -

Sequence

Protein


Download         Length: 784 a.a.        Molecular weight: 88351.51 Da        Isoelectric Point: 4.6715

>NTDB_id=50475 SII_RS01185 WP_020998279.1 235126..237480(-) (recD/recD2/recDB) [Streptococcus intermedius C270]
MEFYFSGTIERIIFENPSSFFRILLLNIDDTDADFDDFEIIVTGTMADIIEGEDYTFWGNLVQHPKYGEQLKLIRYERAK
PTSKGLVKYFSSDHFKGIGVKTAQKIVDLYGDNTIDKVLAEPEKLHDIVGLSAKNREAFIMKLRQNYGTERVLAKLSEYG
ISNKLAFQIQDFYKEETLEIVEHYPYQLVEDIQGIGFKIADQLAQSLGIESTAPERFRAGLLHTLLTQSMEKGDTYLEAK
ELLEHTIELLESSRQIELDPNSVADELAHLIEEDKVQHVDTKIFENSLFFAEEGICNNLLRILEKGNQNKYEPENIEAAL
AQIEEKFAISYDAIQKQAICDAIQHKIFILTGGPGTGKTTVINGIIAVYALLHGLDLHKSQDLPILLAAPTGRAARRMNE
LTGLPSATIHRHLGMTGDDDTSHLDDYLDADFIIVDEFSMVDTWLANQLLSNISSNSKLLIVGDADQLPSVSPGQVLADL
LKIPLLPQTKLEKIYRQGEDSTIVTLASQIQKGTLPIDFIEKKADRSYFEVRSEQIPQMIERIVEVAIRSGIPAQDVQVL
APMYRGQAGIDHINQLMQDLINPVVKEQLIFEATDGQYRQGDRVIHLINDAESNVFNGDLGYITDLLPAKYADSKQDELT
INFDGNEIVYQRSEWYKIRLAYAMSIHKSQGSEFPVVILPITSSSHRMLQRNLIYTAITRAKSKLILLGEKSAFAFAVKN
TGTTRKTYLLQRFANLPTDEKIMHTSVDDLKTSVEDCVLTEENFSKINPMIGLTEEDIHSIFGN

Nucleotide


Download         Length: 2355 bp        

>NTDB_id=50475 SII_RS01185 WP_020998279.1 235126..237480(-) (recD/recD2/recDB) [Streptococcus intermedius C270]
ATGGAATTTTACTTTTCAGGTACCATCGAACGCATTATCTTTGAAAATCCCAGCAGTTTTTTCCGGATTCTGTTGCTAAA
TATTGACGACACCGATGCGGATTTTGATGATTTTGAGATTATTGTCACCGGCACTATGGCAGATATTATAGAGGGAGAAG
ACTATACTTTCTGGGGAAATCTCGTGCAACACCCTAAATATGGTGAACAGCTCAAACTAATACGCTATGAGCGTGCTAAA
CCAACCAGCAAAGGCTTGGTCAAATATTTTTCAAGCGACCATTTTAAAGGAATCGGTGTAAAAACAGCACAAAAAATTGT
GGATCTCTACGGCGATAACACGATTGATAAGGTCTTGGCAGAACCCGAAAAATTACATGATATTGTAGGCCTTTCTGCTA
AAAATCGCGAAGCCTTTATTATGAAACTAAGACAGAACTACGGTACCGAGCGAGTCCTTGCAAAGCTATCTGAATACGGC
ATTTCAAATAAACTTGCCTTTCAGATTCAAGATTTTTACAAAGAAGAGACTCTCGAAATTGTCGAACACTATCCTTATCA
ATTAGTGGAAGATATTCAAGGAATAGGATTTAAAATTGCCGACCAACTGGCGCAAAGCTTAGGAATTGAAAGTACTGCTC
CAGAGCGCTTCCGTGCAGGATTACTCCACACACTTCTAACCCAGTCCATGGAAAAAGGCGACACCTATCTTGAAGCAAAA
GAGCTTCTGGAACACACCATTGAACTTCTGGAAAGCTCCCGACAGATCGAACTAGATCCAAATTCCGTTGCAGATGAGCT
AGCTCATTTGATTGAAGAAGATAAAGTCCAACATGTCGATACGAAGATTTTTGAAAACAGTCTCTTTTTTGCTGAAGAAG
GAATTTGCAACAATCTCTTACGCATTCTGGAGAAGGGAAATCAAAATAAATATGAACCAGAAAACATCGAAGCTGCGCTT
GCTCAAATCGAAGAAAAATTTGCTATTTCTTACGATGCGATTCAGAAGCAAGCTATTTGCGATGCTATCCAGCATAAAAT
TTTCATCTTAACAGGTGGTCCTGGAACTGGAAAAACGACTGTCATCAATGGAATTATTGCTGTCTACGCGCTGCTACATG
GTCTGGATTTACACAAATCTCAAGATTTACCTATCCTTTTAGCCGCTCCAACTGGGCGTGCTGCTAGACGCATGAATGAA
TTAACAGGACTGCCAAGTGCGACGATTCATCGGCATTTAGGCATGACAGGAGACGATGACACCAGTCATTTAGACGATTA
TTTGGACGCAGATTTTATTATTGTGGACGAATTTTCAATGGTAGATACTTGGTTAGCCAATCAACTACTCAGCAATATCT
CTTCCAATAGCAAGCTACTCATTGTCGGAGATGCCGACCAGCTACCCTCTGTCAGCCCTGGACAAGTGTTAGCAGATTTG
CTGAAAATCCCCCTCCTTCCACAGACCAAATTAGAAAAAATTTATCGGCAGGGCGAAGATTCCACGATCGTGACCTTAGC
TAGTCAGATTCAAAAAGGCACTCTGCCAATTGATTTCATTGAAAAAAAAGCAGATCGTTCTTATTTTGAAGTTCGTAGCG
AGCAGATTCCACAGATGATTGAACGCATTGTGGAAGTCGCTATCCGTAGTGGTATTCCAGCTCAAGATGTACAAGTACTT
GCTCCTATGTACCGTGGACAAGCAGGAATTGACCACATCAATCAACTCATGCAAGATCTGATCAATCCTGTTGTAAAAGA
ACAACTCATCTTTGAAGCTACTGATGGTCAATACCGACAAGGTGATCGGGTTATTCATCTCATCAACGATGCTGAAAGCA
ATGTGTTCAACGGTGATTTGGGTTATATCACCGATTTACTACCAGCAAAATATGCCGATTCCAAGCAAGATGAACTGACT
ATCAATTTCGACGGCAATGAGATTGTTTATCAACGCAGTGAATGGTATAAAATTCGTCTGGCCTATGCCATGAGCATCCA
CAAATCTCAGGGTAGTGAATTTCCTGTCGTCATTTTACCAATTACCTCCAGCAGCCACCGTATGCTACAGCGCAATCTTA
TCTATACCGCCATCACCCGCGCCAAGAGCAAATTGATTCTTCTTGGGGAAAAGTCTGCTTTCGCCTTTGCTGTGAAAAAT
ACCGGCACCACCCGTAAAACCTATCTCCTTCAACGTTTTGCAAATCTACCAACAGATGAAAAAATAATGCACACTTCTGT
GGATGATTTGAAAACAAGCGTGGAAGACTGTGTCTTGACTGAAGAAAATTTTTCGAAAATAAATCCTATGATCGGACTGA
CTGAAGAAGATATCCACAGTATCTTTGGCAACTAA

Domains

Predicted by InterProScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(573-643)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(661-708)

Helix-hairpin-helix containing domain (HHH_RecD2)

(146-236)

AAA domain (AAA_30)

(331-528)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

41.867

95.663

0.401

Multiple sequence alignment