Detailed information NTG0504382

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: KP952_RS05105
• Genome accession: NZ_CP076731
• Coordinates: 985707..986879 (+)
• Length: 390 a.a.
• NCBI ID: WP_014479273.1
• Uniprot ID: -
• Organism: Bacillus subtilis subsp. subtilis strain Miz-8
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 980707..991879

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KP952_RS05085 (KP952_05085)	-	982573..983562 (+)	990	WP_033881969.1	bifunctional lytic transglycosylase/C40 family peptidase	-
KP952_RS05090 (KP952_05090)	-	983577..984083 (+)	507	WP_031600318.1	hypothetical protein	-
KP952_RS05095 (KP952_05095)	-	984146..984529 (+)	384	WP_033881966.1	cystatin-like fold lipoprotein	-
KP952_RS05100 (KP952_05100)	-	984627..985415 (+)	789	WP_014479271.1	DUF4145 domain-containing protein	-
KP952_RS05105 (KP952_05105)	rapF	985707..986879 (+)	1173	WP_014479273.1	Rap family tetratricopeptide repeat protein	Regulator
KP952_RS05110 (KP952_05110)	-	987143..987589 (-)	447	WP_014479275.1	hypothetical protein	-
KP952_RS05115 (KP952_05115)	yhcN	987739..988314 (+)	576	WP_038829230.1	YhcN/YlaJ family sporulation lipoprotein	-
KP952_RS21820	-	988435..989334 (+)	900	WP_225910702.1	hypothetical protein	-
KP952_RS05130 (KP952_05130)	yhcQ	989331..989950 (-)	620	Protein_950	spore coat protein	-

Sequence

Protein

• Length: 390 a.a.
• Molecular weight: 46089.52 Da
• Isoelectric Point: 5.6997

>NTDB_id=504382 KP952_RS05105 WP_014479273.1 985707..986879(+) (rapF) [Bacillus subtilis subsp. subtilis strain Miz-8]
MRGVLDKDKIPYDVVTKKLNEWYTHIKNDALEKAKQIKKEVEEDLKKMEESKDALLYYQLLEFRHELLVNYMNSEKTEEL
KSSYLAMKKLEDQGNVTGMLEYYFHFFMGMYEFRRKKLTAAITSYRKAEAKLSEVDDEIEKAEFFFKVSYVYYYMKQTYF
SLNYAYRALEIYQRYDDYFIQRLRCQFVLGGNFIDSLEYEKALDTFMEALKIAEEIKIDYLIGMAHINIGICFDELKDYK
SASSHLKKALDLLEVSDHSFVAKTLFILTHVKIKQGDKESAGDYFQKGHEFVNKTNDAEYNAKFKILEGLYFSNGEYELI
SEAFAYFDSMKMYADLENYAVEVAQFFHRKQDFQRSSEYYMMSVEARNKIKKGEIINETQSGHIGSSGVN

Nucleotide

• Length: 1173 bp

>NTDB_id=504382 KP952_RS05105 WP_014479273.1 985707..986879(+) (rapF) [Bacillus subtilis subsp. subtilis strain Miz-8]
TTGCGAGGTGTTTTAGATAAAGATAAAATTCCATATGATGTAGTTACAAAAAAATTAAACGAATGGTACACCCATATAAA
AAATGATGCTCTTGAGAAAGCTAAACAAATAAAAAAAGAAGTTGAAGAAGATCTAAAAAAAATGGAAGAAAGTAAAGATG
CTTTACTATATTATCAATTACTTGAATTCCGCCACGAGTTATTGGTCAATTACATGAATTCAGAAAAGACAGAAGAATTG
AAAAGTTCATATCTGGCTATGAAAAAGTTGGAGGACCAGGGCAATGTTACTGGAATGTTGGAATATTATTTTCATTTCTT
TATGGGGATGTATGAATTCAGAAGAAAAAAACTAACTGCGGCAATAACTTCATATAGAAAAGCAGAAGCTAAATTAAGTG
AAGTAGATGATGAGATTGAAAAAGCAGAATTCTTTTTTAAAGTATCATATGTTTATTACTATATGAAGCAAACATACTTT
TCGCTTAACTATGCCTATAGAGCTCTTGAAATATATCAAAGGTATGATGATTACTTTATACAGAGATTAAGATGTCAATT
TGTATTAGGTGGAAACTTTATTGACTCCCTAGAATATGAAAAGGCATTGGATACATTTATGGAAGCGTTAAAAATAGCTG
AAGAAATTAAAATTGATTATTTAATTGGGATGGCACACATCAACATAGGTATTTGCTTTGATGAGTTAAAAGACTACAAA
AGTGCATCAAGTCATCTAAAAAAGGCGTTAGATTTGTTAGAGGTTAGCGATCACAGTTTTGTTGCGAAAACTCTTTTTAT
TTTAACACATGTAAAGATCAAGCAAGGTGACAAAGAATCAGCTGGTGACTATTTTCAAAAAGGACATGAGTTTGTAAATA
AAACAAATGATGCTGAATATAATGCTAAATTTAAAATATTAGAAGGACTTTATTTTTCAAATGGTGAATATGAATTGATT
AGTGAGGCTTTTGCATATTTTGATTCAATGAAAATGTATGCAGATTTAGAGAACTATGCTGTTGAAGTGGCCCAATTTTT
TCATCGGAAACAGGATTTTCAACGCTCAAGTGAATATTATATGATGAGTGTTGAAGCAAGAAACAAAATTAAAAAAGGAG
AGATTATTAATGAAACTCAGTCGGGTCATATTGGCAGTAGCGGTGTTAACTAG

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (9-69)

• Tetratricopeptide repeat (TPR_12) (198-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	38.095	96.923	0.369