Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   KQ217_RS11815 Genome accession   NZ_CP076706
Coordinates   2405314..2406078 (+) Length   254 a.a.
NCBI ID   WP_001136243.1    Uniprot ID   -
Organism   Escherichia coli O170:H18 strain CFIAFB20120266     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2400314..2411078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ217_RS11795 (KQ217_11795) acpT 2401268..2401855 (+) 588 WP_000285789.1 4'-phosphopantetheinyl transferase AcpT -
  KQ217_RS11800 (KQ217_11800) nikA 2401966..2403540 (+) 1575 WP_000493122.1 nickel ABC transporter substrate-binding protein -
  KQ217_RS11805 (KQ217_11805) nikB 2403540..2404484 (+) 945 WP_000947070.1 nickel ABC transporter permease subunit NikB -
  KQ217_RS11810 (KQ217_11810) nikC 2404481..2405314 (+) 834 WP_001008957.1 nickel ABC transporter permease subunit NikC -
  KQ217_RS11815 (KQ217_11815) amiE 2405314..2406078 (+) 765 WP_001136243.1 nickel import ATP-binding protein NikD Regulator
  KQ217_RS11820 (KQ217_11820) nikE 2406075..2406881 (+) 807 WP_000173679.1 nickel import ATP-binding protein NikE -
  KQ217_RS11825 (KQ217_11825) nikR 2406887..2407288 (+) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  KQ217_RS11830 (KQ217_11830) yhhJ 2407297..2408421 (-) 1125 WP_001296492.1 ABC transporter permease -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26840.46 Da        Isoelectric Point: 6.6882

>NTDB_id=504230 KQ217_RS11815 WP_001136243.1 2405314..2406078(+) (amiE) [Escherichia coli O170:H18 strain CFIAFB20120266]
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAVRVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSHGKIVEQGDVETLFNAPKHAVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=504230 KQ217_RS11815 WP_001136243.1 2405314..2406078(+) (amiE) [Escherichia coli O170:H18 strain CFIAFB20120266]
ATGCCACAACAGATTGAACTCCGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTGCACGGCGTATCGTTAACCCTGCA
ACGTGGGCGTGTGCTGGCGTTAGTCGGCGGTAGTGGCAGCGGGAAGTCGCTGACCTGCGCCGCGACGCTGGGCATTCTGC
CTGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTGGCCGATGGAAAACCGGTTTCTCCCTGCGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCGCTGCACACCATGCACACTCACGCGCGTGAAACCTGCCT
GGCGCTGGGGAAACCCGCCGACGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGTGCGCGTGC
TGAAGCTCTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCAGTGCTGTGCGAATCACCG
TTTATCATCGCCGATGAACCAACCACCGACCTCGACGTAGTAGCACAAGCACGCATCCTCGATCTACTGGAAAGCATTAT
GCAAAAACAAGCACCGGGAATGCTGCTGGTTACCCATGATATGGGCGTGGTAGCGCGTCTGGCAGACGATGTGGCGGTAA
TGTCTCACGGTAAGATTGTTGAACAGGGCGATGTAGAAACGCTGTTTAACGCCCCCAAACATGCGGTAACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398