Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   KRG72_RS07670 Genome accession   NZ_CP076703
Coordinates   1538988..1539773 (-) Length   261 a.a.
NCBI ID   WP_006532961.1    Uniprot ID   A0AB33ANX2
Organism   Streptococcus equinus strain S1     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1533988..1544773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KRG72_RS07650 (KRG72_07660) gatB 1535052..1536494 (-) 1443 WP_258250400.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  KRG72_RS07655 (KRG72_07665) gatA 1536494..1537960 (-) 1467 WP_258250401.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  KRG72_RS07660 (KRG72_07670) gatC 1537960..1538262 (-) 303 WP_006532958.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  KRG72_RS07665 (KRG72_07675) - 1538440..1538988 (-) 549 WP_004233137.1 cysteine hydrolase family protein -
  KRG72_RS07670 (KRG72_07680) codY 1538988..1539773 (-) 786 WP_006532961.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  KRG72_RS07675 (KRG72_07685) - 1539980..1541194 (-) 1215 WP_039696347.1 pyridoxal phosphate-dependent aminotransferase -
  KRG72_RS07680 (KRG72_07690) - 1541231..1543018 (-) 1788 WP_309137137.1 glycerophosphodiester phosphodiesterase -
  KRG72_RS07685 (KRG72_07695) - 1543317..1543769 (+) 453 WP_074560846.1 universal stress protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28836.91 Da        Isoelectric Point: 4.3995

>NTDB_id=504086 KRG72_RS07670 WP_006532961.1 1538988..1539773(-) (codY) [Streptococcus equinus strain S1]
MPNLLEKTRKITSILQRSVDSLDTELPYNTMAAQLADIIDCNSCIINGGGTLLGYAMKYKTNTDRVEEFFQAKQFPESYV
KAASRVYDTEANLSVDNDLTIFPVESKDIYPDGLTTIAPIYGGGMRLGSLIIWRNDEEFSEDDLILVEIASTVVGIQLLN
LQTENLEETIRKQTAVNMAINTLSYSEMKAVSAILGELDGTEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVINEGIFDKLKEYN

Nucleotide


Download         Length: 786 bp        

>NTDB_id=504086 KRG72_RS07670 WP_006532961.1 1538988..1539773(-) (codY) [Streptococcus equinus strain S1]
ATGCCGAATTTATTAGAAAAAACACGTAAGATTACATCAATTTTGCAACGCTCTGTTGACAGCCTAGATACTGAATTGCC
ATATAACACAATGGCCGCTCAACTTGCTGACATTATTGATTGTAACTCTTGCATCATCAATGGGGGAGGAACCCTTCTTG
GTTATGCAATGAAATACAAAACTAATACTGACCGTGTTGAGGAATTCTTTCAAGCAAAACAATTCCCAGAAAGTTATGTA
AAAGCAGCTAGTCGTGTTTACGATACTGAAGCTAACTTGTCTGTAGATAATGATTTGACAATTTTCCCAGTTGAATCAAA
AGATATCTATCCTGATGGATTGACAACAATCGCCCCAATTTATGGTGGTGGTATGCGCCTTGGTTCTCTTATCATCTGGC
GTAACGATGAAGAATTCTCAGAAGACGATTTAATCCTTGTTGAAATCGCCTCTACAGTAGTTGGTATTCAATTGCTTAAT
CTTCAAACTGAAAATCTTGAAGAAACAATCCGTAAACAAACAGCTGTTAACATGGCTATCAACACACTTTCATATTCTGA
AATGAAAGCTGTATCTGCTATTTTGGGTGAATTGGACGGAACTGAAGGTCGCTTGACTGCGTCAGTTATCGCTGACCGTA
TCGGTATCACACGTTCAGTTATCGTTAATGCCCTTCGTAAATTGGAATCAGCAGGTATCATCGAAAGCCGTTCATTGGGT
ATGAAAGGTACATACCTTAAAGTCATCAATGAAGGTATCTTCGACAAATTAAAGGAATATAATTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-261)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AB33ANX2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

65.517

100

0.655
  codY Bacillus subtilis subsp. subtilis str. 168

51.822

94.636

0.49