Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   HWI60_RS05915 Genome accession   NZ_CP064646
Coordinates   1250706..1253138 (+) Length   810 a.a.
NCBI ID   WP_408021035.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain UMCG388     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1245706..1258138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWI60_RS05890 (HWI60_05870) - 1246032..1246175 (+) 144 WP_001830746.1 SAS049 family protein -
  HWI60_RS05895 (HWI60_05875) - 1246375..1247370 (-) 996 WP_001830781.1 LLM class flavin-dependent oxidoreductase -
  HWI60_RS05900 (HWI60_05880) - 1247613..1248755 (+) 1143 WP_001830848.1 cysteine desulfurase family protein -
  HWI60_RS05905 (HWI60_05885) mnmA 1248755..1249873 (+) 1119 WP_001830892.1 tRNA 2-thiouridine(34) synthase MnmA -
  HWI60_RS05910 (HWI60_05890) - 1250036..1250704 (+) 669 WP_001832695.1 tetratricopeptide repeat protein -
  HWI60_RS05915 (HWI60_05895) recD2 1250706..1253138 (+) 2433 WP_408021035.1 ATP-dependent RecD-like DNA helicase Machinery gene
  HWI60_RS05920 (HWI60_05900) alaS 1253467..1256097 (+) 2631 WP_002440135.1 alanine--tRNA ligase -
  HWI60_RS05925 (HWI60_05905) - 1256161..1256421 (+) 261 WP_001830883.1 IreB family regulatory phosphoprotein -
  HWI60_RS05930 (HWI60_05910) ruvX 1256423..1256851 (+) 429 WP_001830837.1 Holliday junction resolvase RuvX -
  HWI60_RS05935 (HWI60_05915) - 1256866..1257174 (+) 309 WP_001830855.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 810 a.a.        Molecular weight: 91889.61 Da        Isoelectric Point: 4.7264

>NTDB_id=503986 HWI60_RS05915 WP_408021035.1 1250706..1253138(+) (recD2) [Staphylococcus epidermidis strain UMCG388]
MSDPTLFDYSMIKGTVDAILFQNTDNFYTVLKVDTIESNEKFDSMPTVVGFLPNVVEGDVYTFKGQVVQHPRYGKQLKAE
TFEKELPQTKEAIISYLSSDLFKGIGKKTAQNIVNTLGENAINDILTRPEILESVPSLPKKKQKQIADQINANQESEKIM
IRLHDLGFGPKLSMAIYQFYMGDTLNVLDKNPYQLVYDIKGIGFNKADQLARNVGIEPHSPERLKAALLFTLEEECIKQG
HTYLPRTIVIETTQNLLNEDIEKPIETEQLLEIIDVLSEEKKLISEADQVSIPSLYYSELKSVQNLYRIKTNTSKLKEIE
QSDLQIHIGDIESQNEVNYSASQKEALETAINSKIMLLTGGPGTGKTTVIKGIVELYAEIHGLSLDYDDYNEDDYPVVLA
APTGRASKRLHESTGLEAMTIHRLIGWNQDTQPQDILENEINARLIIIDEMSMVDTWLFHQFLSAVPLEAQIVFVGDEDQ
LPSVGPGQVFKDLIDSEIIPRVNLTEVYRQQDGSSIIDLAHRMKLNEPIDITKRYHDRSFIRCGTNQIPDVVDKVVKSAV
AKGYDMSDIQVLAPMYKGNAGIKRLNQVLQSILNPKQQDDREIEFGEAVFRKGDKVLQLVNRPNDHIFNGDIGIIVGIFW
AKENALNKDVLVVDFEGNEITFTKQDLMELTHAYCTSIHKSQGSEFPIVIMPIVRQYYRMLQRPILYTGLTRAKQSLVLL
GEQEAFDIGLKTNGQIRLTQLNDLLKSYFGQNKNNLTTNKQTINEQKENNNHLDLKNEKENDIQLNESTIFQIDPMINMG
EMTPYDFVER

Nucleotide


Download         Length: 2433 bp        

>NTDB_id=503986 HWI60_RS05915 WP_408021035.1 1250706..1253138(+) (recD2) [Staphylococcus epidermidis strain UMCG388]
ATGTCTGACCCTACACTTTTTGATTATTCAATGATCAAAGGTACAGTTGATGCTATTTTATTTCAAAATACGGATAATTT
TTATACTGTTCTAAAAGTAGATACTATAGAATCAAATGAAAAATTTGATAGTATGCCAACTGTGGTAGGGTTTCTTCCCA
ATGTAGTTGAAGGCGATGTTTATACTTTTAAAGGGCAAGTCGTACAACATCCACGTTATGGTAAGCAATTAAAGGCTGAA
ACATTTGAAAAAGAATTACCTCAAACTAAAGAAGCCATTATTAGTTACTTATCAAGTGATTTATTTAAAGGCATCGGTAA
AAAAACGGCTCAAAACATTGTAAATACACTAGGTGAAAATGCTATAAATGATATTTTAACTCGTCCAGAAATCTTAGAAA
GTGTACCTAGTTTACCAAAGAAGAAACAAAAGCAAATTGCTGATCAGATTAATGCAAACCAAGAATCTGAGAAAATTATG
ATACGTTTACACGACCTAGGGTTTGGTCCGAAATTATCAATGGCTATATATCAGTTCTATATGGGTGATACTTTAAATGT
CTTAGATAAAAATCCTTACCAATTAGTATATGACATTAAAGGTATTGGTTTTAATAAGGCTGACCAACTTGCTCGAAATG
TCGGTATTGAGCCACATTCACCTGAAAGATTAAAAGCAGCATTATTATTTACGTTAGAAGAAGAATGTATCAAACAAGGA
CATACATATCTACCTCGTACAATTGTTATAGAAACAACACAAAATTTACTCAATGAAGATATTGAGAAACCAATTGAAAC
AGAGCAATTACTAGAAATCATTGACGTTTTATCAGAAGAGAAAAAATTAATATCTGAAGCTGATCAGGTATCAATTCCAA
GTTTATACTATTCAGAATTGAAAAGTGTGCAAAACTTATACCGAATTAAAACAAACACATCTAAATTAAAAGAAATAGAA
CAGTCTGATTTACAAATACATATTGGTGATATTGAGTCACAAAATGAGGTTAATTACTCTGCCTCTCAAAAAGAAGCGCT
TGAAACAGCAATAAATTCTAAAATTATGCTTTTAACTGGTGGTCCGGGTACCGGTAAAACCACAGTCATTAAAGGTATAG
TTGAATTATATGCAGAAATACATGGGCTCTCGCTCGATTATGATGATTACAATGAAGATGATTATCCAGTAGTGTTAGCT
GCACCCACTGGTCGTGCTTCTAAGCGCCTTCACGAATCGACAGGTTTAGAAGCAATGACAATTCATCGTTTAATCGGTTG
GAACCAAGATACACAACCACAGGATATTTTAGAAAATGAGATCAATGCAAGACTCATTATCATCGATGAAATGTCAATGG
TAGATACTTGGTTGTTCCATCAATTTTTAAGCGCTGTGCCTTTAGAAGCACAAATTGTATTTGTCGGAGATGAAGATCAG
TTACCATCAGTAGGTCCAGGACAGGTATTTAAAGACCTTATTGATTCTGAAATAATACCGCGTGTTAATCTTACCGAAGT
ATATCGTCAGCAAGATGGTTCCAGTATTATTGACTTAGCTCACCGTATGAAATTAAATGAACCTATCGATATTACTAAAC
GTTATCATGATCGTAGTTTTATTCGTTGTGGTACGAATCAAATTCCAGACGTTGTTGATAAAGTAGTTAAAAGCGCTGTA
GCTAAAGGCTATGATATGAGTGATATACAAGTTTTGGCTCCTATGTATAAAGGTAACGCTGGTATTAAGAGACTTAACCA
AGTTCTACAATCTATTCTTAATCCGAAGCAACAAGATGATCGTGAAATAGAATTTGGTGAAGCTGTGTTTAGAAAAGGGG
ATAAAGTACTTCAGTTAGTTAATCGACCTAATGATCATATATTTAATGGGGATATAGGTATAATAGTAGGTATATTTTGG
GCCAAAGAAAATGCTCTAAATAAGGATGTGTTAGTTGTAGATTTTGAAGGTAATGAAATTACATTTACTAAACAAGATTT
AATGGAACTAACACATGCATATTGTACATCTATCCATAAATCACAAGGTTCAGAATTTCCTATTGTAATTATGCCTATTG
TTAGACAATATTATAGGATGTTACAACGTCCCATTCTTTATACAGGATTAACTAGAGCTAAACAATCACTTGTTTTGCTT
GGTGAACAAGAAGCATTTGATATAGGTTTAAAAACAAATGGACAAATACGATTAACGCAATTAAATGATTTGTTAAAATC
GTATTTTGGACAAAACAAAAATAATTTAACTACAAATAAACAAACGATTAACGAACAAAAAGAAAATAACAATCATCTGG
ATTTGAAAAATGAAAAAGAAAATGATATCCAATTAAACGAGTCGACAATTTTCCAAATCGATCCAATGATTAATATGGGG
GAAATGACGCCATATGACTTCGTTGAACGTTGA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-655)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(672-720)

AAA domain (AAA_30)

(339-545)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.01

99.753

0.489