Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   KPA27_RS05495 Genome accession   NZ_CP076517
Coordinates   1078325..1080061 (-) Length   578 a.a.
NCBI ID   WP_202847689.1    Uniprot ID   -
Organism   Streptococcus suis strain 39565     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1073325..1085061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPA27_RS05480 (KPA27_05480) - 1074123..1075046 (+) 924 WP_044679604.1 polysaccharide deacetylase family protein -
  KPA27_RS05485 (KPA27_05485) - 1075142..1076493 (+) 1352 WP_216330907.1 IS3 family transposase -
  KPA27_RS05490 (KPA27_05490) rcrQ 1076547..1078316 (-) 1770 WP_202847690.1 ABC transporter ATP-binding protein Regulator
  KPA27_RS05495 (KPA27_05495) rcrP 1078325..1080061 (-) 1737 WP_202847689.1 ABC transporter ATP-binding protein Regulator
  KPA27_RS05500 (KPA27_05500) - 1080255..1080497 (-) 243 WP_002940680.1 KH domain-containing protein -
  KPA27_RS05505 (KPA27_05505) rpsP 1080519..1080791 (-) 273 WP_002940682.1 30S ribosomal protein S16 -
  KPA27_RS05510 (KPA27_05510) - 1080920..1081303 (-) 384 WP_202847688.1 SgcJ/EcaC family oxidoreductase -
  KPA27_RS05515 (KPA27_05515) - 1081316..1081624 (-) 309 WP_202847687.1 DUF4298 domain-containing protein -
  KPA27_RS05520 (KPA27_05520) pcp 1081624..1082271 (-) 648 WP_204108393.1 pyroglutamyl-peptidase I -
  KPA27_RS05525 (KPA27_05525) - 1082246..1083034 (-) 789 WP_202847721.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 65211.50 Da        Isoelectric Point: 5.1965

>NTDB_id=503163 KPA27_RS05495 WP_202847689.1 1078325..1080061(-) (rcrP) [Streptococcus suis strain 39565]
MRLIWTYLKKYPKWIALDLFGAFLFIVVNLGLPTFLARMIDQGITKNNVDQLYFWAGMMGLIVLLGIIGRVTLAYAAGQL
TTNIVKDIRNDLYEKIQDYSHHEYEQIGVSSLVARMTNDAFVLMQFAEMVLKLGIITPLMMVASVIMTLVTSPSLAWTVA
VAMPFLVFVIFYVATKTRPLSEKQQKRLDTINQYVRENLMGLRVIRAFTREDFQEERFAEVNEEYTETSKKLFNLTGLTE
PLFVQIIIAMIVAIVWFALPPLKDGSLQIGDLVAFIEYSFHALFSFLLFANLFNMYPRMSVSSQRIQEVLDMPISISKNE
DGITETDTRGYLEFENVTFAYPGETESPVLHNISFKAKPGETIAFIGSTGSGKSSLVNLIPRFYDVTLGRILVDGVDVRR
YNLKALRSKIGFIPQKALLFTGTIAENLKYGKMDASLAELHDATDVAQAKEFIESKEEKFDTHLAEGGSNLSGGQKQRLS
IARAIVKQPDIYIFDDSFSALDYKTDAILRSRLKEVTENATVLIVAQRVGTIMDADQIIVLNEGEIVGRGTHNELMESNE
IYREIANSQLNRQSLTEE

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=503163 KPA27_RS05495 WP_202847689.1 1078325..1080061(-) (rcrP) [Streptococcus suis strain 39565]
ATGCGACTGATTTGGACTTATTTGAAAAAATACCCCAAGTGGATTGCTTTAGACTTGTTCGGAGCTTTCCTATTCATTGT
AGTTAACTTGGGCTTGCCAACATTTTTGGCAAGAATGATTGACCAAGGGATTACAAAAAACAATGTTGATCAATTATATT
TCTGGGCAGGCATGATGGGTTTGATTGTTTTGCTCGGTATTATTGGACGAGTGACACTTGCCTATGCGGCTGGACAGTTG
ACAACCAATATCGTCAAGGATATTCGGAATGATTTGTATGAGAAAATTCAGGACTATTCTCATCATGAATATGAGCAAAT
TGGCGTTTCTTCTCTTGTGGCTCGTATGACCAACGATGCTTTTGTCTTGATGCAGTTTGCGGAGATGGTATTGAAACTGG
GAATTATCACACCTTTGATGATGGTGGCCTCGGTCATCATGACCTTGGTAACCAGTCCGAGCTTGGCCTGGACAGTAGCA
GTAGCTATGCCGTTTCTAGTTTTTGTTATTTTCTATGTAGCTACTAAAACTCGTCCACTTTCTGAAAAACAACAGAAACG
ATTGGACACCATTAACCAGTATGTTCGTGAAAATCTCATGGGCTTGCGGGTCATTCGTGCCTTTACGCGTGAAGATTTTC
AAGAAGAGCGTTTTGCAGAGGTCAATGAAGAATATACTGAAACATCCAAAAAACTCTTTAACCTGACTGGTCTGACAGAG
CCGCTCTTTGTCCAGATTATCATTGCTATGATTGTGGCCATTGTCTGGTTTGCCCTGCCTCCTTTGAAAGATGGCAGTTT
GCAAATTGGTGATTTGGTAGCCTTTATCGAATATAGTTTCCACGCCCTATTCTCATTCTTGCTCTTTGCTAACTTGTTTA
ACATGTATCCGCGTATGTCGGTGTCTAGTCAGCGAATTCAAGAAGTCTTGGACATGCCTATCTCTATTTCTAAGAATGAG
GACGGTATTACTGAAACAGATACTCGTGGCTATTTGGAATTTGAAAATGTAACTTTTGCCTATCCTGGTGAAACGGAGTC
GCCTGTATTGCACAATATTTCCTTCAAAGCTAAGCCTGGTGAAACCATTGCCTTTATTGGTTCAACAGGTTCTGGTAAGT
CTTCCTTGGTCAACTTGATTCCACGTTTCTATGATGTGACACTTGGTCGTATCTTGGTGGACGGTGTGGATGTCAGACGC
TACAATCTAAAGGCACTCCGCAGCAAGATTGGCTTTATTCCGCAGAAAGCTCTGCTATTTACCGGAACTATCGCGGAAAA
CTTAAAGTACGGTAAGATGGATGCTAGTCTTGCTGAACTTCATGATGCGACGGATGTGGCTCAGGCTAAGGAGTTTATCG
AGAGTAAGGAAGAAAAATTCGACACCCATCTAGCAGAAGGCGGAAGCAACCTGTCAGGCGGGCAAAAACAACGTTTGTCC
ATTGCGCGTGCCATTGTCAAACAGCCGGATATCTATATCTTTGATGATTCTTTCTCAGCCTTGGATTATAAGACGGATGC
GATTTTGAGAAGTCGTTTGAAGGAAGTGACAGAAAATGCGACGGTGCTGATTGTTGCCCAACGTGTCGGAACCATTATGG
ATGCTGACCAGATTATCGTGCTGAACGAAGGTGAAATTGTCGGTCGTGGCACCCACAATGAATTGATGGAAAGCAATGAG
ATTTACCGAGAAATTGCCAACTCTCAACTTAACCGTCAATCGTTAACAGAAGAATAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-280)

ABC transporter (ABC_tran)

(350-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.704

100

0.403