Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   KPA27_RS01820 Genome accession   NZ_CP076517
Coordinates   357211..357999 (+) Length   262 a.a.
NCBI ID   WP_063725165.1    Uniprot ID   -
Organism   Streptococcus suis strain 39565     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 352211..362999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPA27_RS01795 (KPA27_01795) - 352828..353787 (-) 960 WP_004195766.1 asparaginase -
  KPA27_RS10525 - 353857..355222 (+) 1366 Protein_322 Cof-type HAD-IIB family hydrolase -
  KPA27_RS01810 (KPA27_01810) - 355238..355690 (-) 453 WP_004195772.1 universal stress protein -
  KPA27_RS01815 (KPA27_01815) - 355845..357059 (+) 1215 WP_044673542.1 pyridoxal phosphate-dependent aminotransferase -
  KPA27_RS01820 (KPA27_01820) codY 357211..357999 (+) 789 WP_063725165.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  KPA27_RS01825 (KPA27_01825) - 358001..358552 (+) 552 WP_044673550.1 isochorismatase family cysteine hydrolase -
  KPA27_RS01830 (KPA27_01830) rplS 358818..359165 (+) 348 WP_011921928.1 50S ribosomal protein L19 -
  KPA27_RS01835 (KPA27_01835) - 359353..360027 (+) 675 WP_012774968.1 hydrolase -
  KPA27_RS01840 (KPA27_01840) gatC 360244..360546 (+) 303 WP_011921930.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  KPA27_RS01845 (KPA27_01845) gatA 360546..362012 (+) 1467 WP_024401542.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29362.42 Da        Isoelectric Point: 4.6190

>NTDB_id=503136 KPA27_RS01820 WP_063725165.1 357211..357999(+) (codY) [Streptococcus suis strain 39565]
MTTLLEKTRNITSILKRSEEQLAEELPYNAIAEHLSAIIDCNSCIINSEGEVLGYHMNYETNNDRVEEFFQNKQFPEGYV
KAVAQVYDTQVNLPVESELTAIPVESRSTYPNGLTTIAPIHVTGIRFGSLIIWRNDEQFHDDDLILVEIAATVVGIQLLN
FQREEDEKNIRRRAAVNMAVNTLSYSEMKVVAAILGELDGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIPAIFDEIKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=503136 KPA27_RS01820 WP_063725165.1 357211..357999(+) (codY) [Streptococcus suis strain 39565]
ATGACAACATTATTAGAGAAGACACGGAATATTACTTCTATTTTGAAGCGTTCCGAAGAGCAATTGGCAGAAGAATTGCC
TTACAATGCCATTGCTGAGCATTTATCAGCTATTATTGACTGCAACTCGTGCATCATTAATAGTGAAGGTGAAGTTTTGG
GATACCACATGAACTATGAGACGAACAATGATCGTGTGGAAGAATTTTTCCAAAATAAACAATTCCCAGAAGGATATGTA
AAAGCAGTTGCGCAGGTTTACGATACGCAGGTTAATTTGCCTGTCGAGAGCGAGTTGACTGCCATCCCTGTCGAATCACG
ATCGACTTATCCAAACGGGCTGACAACGATAGCGCCTATCCACGTAACGGGGATTCGTTTTGGTTCGCTTATTATTTGGC
GGAATGATGAGCAGTTTCACGATGATGATTTGATTTTGGTTGAGATTGCGGCAACAGTAGTTGGTATTCAGTTACTTAAT
TTCCAACGGGAAGAAGACGAGAAGAATATCCGTCGTCGTGCGGCAGTTAATATGGCGGTAAATACGCTATCTTACTCAGA
AATGAAAGTAGTTGCAGCTATTTTGGGTGAATTGGATGGCAATGAGGGGCAATTGACTGCTTCTGTGATTGCAGATCGTA
TCGGTATTACACGCTCGGTGATTGTGAATGCACTGCGTAAGTTGGAGAGTGCAGGGATTATTGAAAGTCGTTCTTTGGGA
ATGAAGGGGACTTATTTGAAAGTTCTCATCCCAGCTATTTTTGATGAAATTAAGAAACGTGACTACTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(202-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

58.779

100

0.588
  codY Bacillus subtilis subsp. subtilis str. 168

52.439

93.893

0.492