Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   KPA27_RS01095 Genome accession   NZ_CP076517
Coordinates   196715..199204 (-) Length   829 a.a.
NCBI ID   WP_202847598.1    Uniprot ID   -
Organism   Streptococcus suis strain 39565     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 191715..204204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPA27_RS01070 (KPA27_01070) dinB 192557..193651 (+) 1095 WP_202847595.1 DNA polymerase IV -
  KPA27_RS01075 (KPA27_01075) - 193635..194054 (+) 420 WP_172028317.1 Rrf2 family transcriptional regulator -
  KPA27_RS01080 (KPA27_01080) - 194190..194816 (+) 627 WP_202847596.1 NAD(P)-dependent oxidoreductase -
  KPA27_RS01085 (KPA27_01085) - 194918..195838 (+) 921 WP_202847597.1 PfkB family carbohydrate kinase -
  KPA27_RS01090 (KPA27_01090) - 195886..196524 (+) 639 WP_014636205.1 DNA repair protein -
  KPA27_RS01095 (KPA27_01095) recD/recD2/recDB 196715..199204 (-) 2490 WP_202847598.1 ATP-dependent RecD-like DNA helicase Machinery gene
  KPA27_RS01100 (KPA27_01100) lepB 199268..199897 (-) 630 WP_204108398.1 signal peptidase I -
  KPA27_RS01105 (KPA27_01105) rnhC 199907..200797 (-) 891 WP_216330817.1 ribonuclease HIII -
  KPA27_RS01110 (KPA27_01110) - 200882..201865 (+) 984 WP_041179368.1 Gfo/Idh/MocA family oxidoreductase -
  KPA27_RS01115 (KPA27_01115) - 202214..203374 (+) 1161 WP_216330819.1 LysM domain-containing protein -

Sequence

Protein


Download         Length: 829 a.a.        Molecular weight: 92987.33 Da        Isoelectric Point: 4.5797

>NTDB_id=503132 KPA27_RS01095 WP_202847598.1 196715..199204(-) (recD/recD2/recDB) [Streptococcus suis strain 39565]
MNEVYVTGTIDRIIFENPSNFYKILLLEIEETDADYDDYEIIVTGTIADVIEGEDYRFYGNLVTHPKYGQQLQISRYERS
KPTSAGLVKYFSSEHFKGIGRKTAEKIIELYGEDTIDKILAEPEKLTQITGLSSKNMQAFVEKLRLNYGTELILAKLAEY
GIPNKLAFQIQDQYKEKTLQIIEENPYQLVEDVQGLGFTIADRIAENLGIASDSPQRFRAGMLFSLIHRSMETGDTYVEA
RDLLEATLELLEKSRHTELDPAAVAKELTGLIADDKVQQEGTKIFDNSLYFAEHGIHKNLTRLMGKNGFKPFPRADVEAA
IAELETMSSLTYDDIQKEAIVQAITNPLFILTGGPGTGKTTVINGIIAVYAILHKIDLTRNREECPVLLAAPTGRAARRM
NELTGLPSATIHRHLGLVEGQEESYRDDYLEADFIIVDEFSMVDTWLANQLFQNISSQTQVLIVGDAEQLPSVSPGQVLA
DLLKIDKLPSITLERIYRQSDDSTIVTLASQIRQGALPSDFREKKADRSYFEAQNEQIPALIERIVGAAIKSGIPANEVQ
ILAPMYRGAAGIDQLNTMTQALLNPLEEGELEFLHNEQAFRQGDRVIHLVNDAEANVFNGDLGYITDLLPAKYTDSKQDE
ITINFDGSEVTYPRNEWYKITLAYAMSIHKSQGSEFQVVILPITRTSHRMLQRNLVYTAITRSKSKLILLGEISAFDYAV
KNAGTVRKTYLVPRFQGEMAEQDSKEALAEKAESKTAATVQTQPPTQPNRKKQAEVVKENNQQLSLLDQDQPEKTSPQPT
EYILTVDNLLTIDPMIGIEQADIEEFFKA

Nucleotide


Download         Length: 2490 bp        

>NTDB_id=503132 KPA27_RS01095 WP_202847598.1 196715..199204(-) (recD/recD2/recDB) [Streptococcus suis strain 39565]
ATGAACGAAGTGTATGTTACCGGTACTATTGACCGGATTATTTTTGAAAATCCTAGTAATTTTTATAAAATCCTTCTCCT
TGAAATCGAGGAGACAGACGCAGACTATGATGACTACGAAATTATTGTGACCGGAACGATTGCCGATGTCATTGAAGGAG
AAGACTATCGTTTCTATGGCAATCTGGTCACCCATCCCAAGTATGGTCAGCAGCTGCAAATTTCGCGTTACGAACGCAGC
AAGCCTACCTCAGCTGGTCTGGTCAAGTATTTCTCCAGCGAGCATTTCAAGGGAATTGGACGCAAAACAGCTGAAAAAAT
CATTGAACTCTATGGTGAAGATACCATTGATAAGATTTTGGCCGAGCCTGAAAAACTGACCCAAATCACAGGCCTATCCA
GCAAGAACATGCAGGCATTTGTGGAGAAACTCCGCCTCAATTATGGAACGGAGTTGATCTTGGCAAAACTAGCCGAGTAT
GGCATTCCCAATAAATTGGCCTTTCAAATCCAAGACCAGTATAAGGAAAAAACACTTCAGATTATTGAAGAAAATCCCTA
TCAACTGGTCGAAGATGTCCAGGGGCTCGGCTTTACCATTGCCGATAGGATTGCGGAAAATCTAGGAATTGCCAGTGATT
CACCCCAACGTTTTCGGGCTGGTATGCTCTTTAGTCTCATTCATCGCTCCATGGAAACAGGCGATACCTATGTGGAGGCC
AGAGACTTGCTGGAAGCAACTCTTGAACTGCTGGAAAAATCCCGCCATACAGAGCTGGACCCCGCTGCTGTTGCCAAAGA
ATTGACGGGACTGATTGCAGACGACAAGGTACAGCAAGAAGGCACAAAGATTTTTGACAACAGCCTCTACTTTGCCGAAC
ATGGTATCCATAAAAACCTGACCCGCCTGATGGGAAAAAATGGTTTCAAACCCTTCCCACGCGCAGACGTTGAGGCTGCC
ATAGCAGAGCTGGAAACTATGTCTTCCCTGACCTACGATGACATTCAAAAAGAAGCCATCGTCCAAGCCATTACCAATCC
GCTTTTCATTCTGACAGGCGGACCAGGGACTGGAAAAACAACGGTTATCAACGGTATTATCGCGGTCTATGCCATCTTGC
ATAAGATTGACCTGACTCGCAACCGAGAAGAATGCCCAGTCCTCCTAGCCGCTCCAACTGGACGAGCAGCCCGACGGATG
AATGAATTGACAGGTCTGCCTTCTGCCACCATCCACCGCCACCTCGGTCTAGTAGAAGGACAGGAAGAATCCTACCGTGA
TGATTACCTCGAAGCCGACTTCATCATCGTGGATGAGTTTTCTATGGTCGACACTTGGTTGGCAAACCAGCTCTTCCAGA
ACATCTCATCCCAGACCCAAGTTCTGATTGTCGGCGATGCAGAGCAATTACCTTCTGTCAGTCCCGGTCAGGTCCTTGCT
GACCTCCTGAAAATTGACAAGCTACCCAGCATCACTCTAGAACGTATCTATCGTCAATCCGATGATTCGACCATTGTCAC
CCTAGCCAGCCAGATTCGCCAAGGAGCTCTGCCTAGCGATTTCCGTGAGAAAAAGGCTGACCGCTCCTATTTTGAAGCGC
AAAACGAACAAATTCCAGCCCTGATTGAGCGCATTGTCGGCGCAGCTATCAAGTCAGGTATTCCTGCAAACGAAGTACAA
ATCCTCGCTCCCATGTACCGTGGGGCCGCAGGCATTGACCAACTCAACACCATGACCCAGGCCCTGCTCAATCCACTGGA
AGAGGGAGAGTTAGAATTCCTCCATAACGAGCAAGCCTTCCGCCAAGGGGACCGGGTCATTCATCTAGTCAACGACGCCG
AAGCCAATGTCTTCAATGGCGACTTGGGCTACATCACCGACCTCCTACCGGCCAAGTACACCGACTCCAAACAGGATGAA
ATCACCATCAACTTCGACGGTAGCGAGGTCACCTATCCACGCAATGAATGGTACAAGATTACCCTGGCCTATGCCATGTC
CATCCACAAGTCCCAAGGCAGCGAGTTTCAGGTCGTCATCCTTCCCATCACGCGCACCAGCCACCGCATGCTCCAGCGCA
ACCTGGTCTACACCGCCATCACCCGCTCCAAGAGCAAGCTCATCCTCCTGGGCGAAATCTCCGCCTTCGACTATGCCGTC
AAAAACGCCGGAACCGTCCGAAAAACCTATCTGGTCCCACGTTTCCAAGGGGAAATGGCAGAGCAGGATAGCAAGGAAGC
TTTAGCTGAAAAAGCCGAAAGTAAAACAGCGGCAACCGTCCAAACCCAGCCCCCTACACAGCCAAACAGGAAAAAACAGG
CTGAAGTAGTCAAAGAAAACAACCAACAACTCTCCCTTCTTGATCAAGACCAGCCAGAAAAAACAAGTCCCCAACCCACA
GAATACATTTTGACTGTAGACAACCTACTAACCATCGACCCCATGATTGGCATAGAACAGGCAGATATTGAAGAATTTTT
TAAAGCATAA

Domains

Predicted by InterProScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(575-645)

Helix-hairpin-helix containing domain (HHH_RecD2)

(148-237)

AAA domain (AAA_30)

(332-529)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(663-710)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

41.711

91.677

0.382