Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   KPF76_RS02180 Genome accession   NZ_CP076509
Coordinates   440244..440759 (+) Length   171 a.a.
NCBI ID   WP_002838045.1    Uniprot ID   -
Organism   Campylobacter coli strain R18.1828     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 435244..445759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPF76_RS02155 (KPF76_02155) - 435700..436038 (+) 339 WP_175056166.1 hypothetical protein -
  KPF76_RS02160 (KPF76_02160) - 436047..436772 (+) 726 WP_139890697.1 phosphatidate cytidylyltransferase -
  KPF76_RS02165 (KPF76_02165) dxr 436769..437845 (+) 1077 WP_002777756.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  KPF76_RS02170 (KPF76_02170) - 437842..439236 (+) 1395 WP_002838049.1 M99 family carboxypeptidase catalytic domain-containing protein -
  KPF76_RS02175 (KPF76_02175) tsaD 439233..440240 (+) 1008 WP_002777752.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  KPF76_RS02180 (KPF76_02180) ctsG 440244..440759 (+) 516 WP_002838045.1 type II secretion system protein Machinery gene
  KPF76_RS02185 (KPF76_02185) - 440759..442001 (+) 1243 Protein_426 DUF2920 family protein -
  KPF76_RS02190 (KPF76_02190) - 442011..443861 (+) 1851 WP_072232242.1 motility associated factor glycosyltransferase family protein -
  KPF76_RS02195 (KPF76_02195) - 443956..445677 (+) 1722 WP_052816855.1 flagellin A -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18693.49 Da        Isoelectric Point: 5.7789

>NTDB_id=502984 KPF76_RS02180 WP_002838045.1 440244..440759(+) (ctsG) [Campylobacter coli strain R18.1828]
MKRAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLGN
FNGTKEVNFRVGDDKECLKLVFIDRADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=502984 KPF76_RS02180 WP_002838045.1 440244..440759(+) (ctsG) [Campylobacter coli strain R18.1828]
GTGAAAAGAGCTTTTACTATATTAGAACTTGTTTTTGTGATCGTTATTTTGGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTGAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTCGATCTTGGCAAT
TTCAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAGATAGAGCGGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGCAAAAATGCTATCATTAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

92.398

100

0.924