Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   KME66_RS29385 Genome accession   NZ_CP076457
Coordinates   6682860..6684227 (+) Length   455 a.a.
NCBI ID   WP_216327792.1    Uniprot ID   -
Organism   Streptomyces sp. YPW6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6677860..6689227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KME66_RS29360 (KME66_29360) vraR 6678489..6679109 (-) 621 WP_073222441.1 response regulator transcription factor Regulator
  KME66_RS29365 (KME66_29365) - 6679109..6680395 (-) 1287 WP_216327785.1 sensor histidine kinase -
  KME66_RS29370 (KME66_29370) - 6680353..6681174 (-) 822 WP_073222445.1 ABC transporter permease -
  KME66_RS29375 (KME66_29375) - 6681171..6682028 (-) 858 WP_216327788.1 ABC transporter ATP-binding protein -
  KME66_RS29380 (KME66_29380) - 6682165..6682803 (+) 639 WP_073222447.1 vitamin K epoxide reductase family protein -
  KME66_RS29385 (KME66_29385) rarA 6682860..6684227 (+) 1368 WP_216327792.1 replication-associated recombination protein A Machinery gene
  KME66_RS29390 (KME66_29390) - 6684249..6684950 (-) 702 WP_073222452.1 DUF2470 domain-containing protein -
  KME66_RS29395 (KME66_29395) rpsD 6685142..6685756 (+) 615 WP_073222454.1 30S ribosomal protein S4 -
  KME66_RS29400 (KME66_29400) - 6685774..6687984 (-) 2211 WP_216327795.1 regulator -
  KME66_RS29405 (KME66_29405) - 6688205..6688660 (+) 456 WP_073222458.1 DUF948 domain-containing protein -
  KME66_RS29410 (KME66_29410) - 6688668..6689048 (+) 381 WP_073222460.1 DUF6167 family protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48339.72 Da        Isoelectric Point: 6.1988

>NTDB_id=502697 KME66_RS29385 WP_216327792.1 6682860..6684227(+) (rarA) [Streptomyces sp. YPW6]
MEPDLFTAAAEDRQEKDPSGSPLAVRMRPRTLDEVVGQQHLLKPGSPLRRLVGDGGGPAGASSVILWGPPGTGKTTLAYV
VSKATNKRFVELSAITAGVKEVRAVIESARRATGGFGKETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYFS
VISPLLSRSLLLTLEPLTDEDLRSLLRRALTEERGLGGAVALPEDAEAHLLRIAGGDARRALTALEAAAGAAIATQEAEI
TLETVEATVDRAAVKYDRDGDQHYDVASALIKSIRGSDVDAALHYLARMIEAGEDPRFIARRLMISASEDIGLADPTALP
TAVAAAQAVAMIGFPEAALTLSHATIALALAPKSNAATLAIFAAQDDVRRGLAGPVPAHLRDGHYKGAAKLGHAQGYVYP
HDVQGGIAAQQYAPDAVRGRQYYTPTRYGAEARYADVVERVRERLGRAGEAGEQG

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=502697 KME66_RS29385 WP_216327792.1 6682860..6684227(+) (rarA) [Streptomyces sp. YPW6]
GTGGAGCCCGACCTCTTTACCGCAGCCGCCGAAGACCGCCAGGAGAAGGACCCGTCCGGCAGCCCCCTCGCCGTCCGGAT
GCGTCCGCGCACCCTCGACGAGGTCGTCGGCCAGCAGCATCTGCTGAAGCCGGGCTCGCCCCTGCGCCGCCTCGTCGGCG
ACGGGGGCGGTCCGGCGGGGGCGTCCTCCGTCATCCTGTGGGGCCCGCCCGGCACCGGTAAGACGACCCTGGCGTACGTG
GTCAGCAAGGCCACCAACAAGCGTTTCGTGGAGCTCTCCGCGATCACCGCGGGCGTCAAGGAGGTCCGGGCCGTCATCGA
GAGCGCGCGCCGCGCCACCGGCGGGTTCGGCAAGGAGACCGTCCTCTTCCTGGACGAGATCCACCGCTTCTCCAAGGCCC
AGCAGGACTCCCTGCTGCCCGCCGTGGAGAACCGCTGGGTCACCCTCATCGCCGCCACCACGGAGAATCCGTACTTCTCG
GTCATCTCTCCGCTGCTCTCGCGCTCCCTGCTGCTCACCCTGGAGCCGCTGACCGACGAGGACCTGCGCTCCCTGCTGCG
CCGGGCGCTGACCGAGGAACGGGGCCTCGGCGGGGCGGTCGCCCTGCCCGAGGACGCCGAGGCGCATCTGCTGCGCATCG
CGGGCGGGGACGCGCGCCGGGCGCTCACCGCGCTGGAGGCCGCGGCCGGTGCGGCCATCGCCACGCAGGAGGCGGAGATC
ACGCTGGAGACGGTCGAGGCGACCGTCGACCGGGCCGCCGTGAAGTACGACCGTGACGGCGACCAGCACTACGACGTGGC
CAGCGCCCTCATCAAGTCGATCCGCGGCTCCGACGTGGACGCCGCGCTGCACTATCTGGCCCGGATGATCGAGGCGGGGG
AGGACCCCCGGTTCATCGCCCGACGGCTGATGATCTCGGCCAGCGAGGACATCGGGCTCGCGGATCCCACCGCGCTGCCG
ACGGCGGTGGCGGCCGCCCAGGCCGTCGCCATGATCGGTTTCCCGGAGGCCGCGCTCACCCTCAGCCACGCCACCATCGC
GCTGGCGCTCGCCCCCAAGTCCAACGCGGCGACGCTGGCGATCTTCGCCGCGCAGGACGACGTGCGCAGAGGCCTCGCCG
GTCCCGTCCCGGCCCATCTGCGCGACGGTCACTACAAGGGCGCCGCCAAGCTCGGCCACGCCCAGGGCTATGTCTACCCG
CACGACGTGCAGGGCGGTATCGCCGCGCAGCAGTACGCCCCGGACGCCGTCCGCGGCCGGCAGTACTACACACCCACCCG
CTACGGTGCCGAGGCGCGGTACGCGGACGTCGTCGAGCGGGTCCGCGAGCGCCTCGGCCGCGCCGGCGAGGCCGGCGAGC
AGGGGTAA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(199-275)

ATPase family associated with various cellular activities (AAA) (AAA)

(64-168)

MgsA AAA+ ATPase C terminal (MgsA_C)

(276-441)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

44.316

94.725

0.42