Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   KME66_RS23245 Genome accession   NZ_CP076457
Coordinates   5258382..5260607 (+) Length   741 a.a.
NCBI ID   WP_216325536.1    Uniprot ID   -
Organism   Streptomyces sp. YPW6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5253382..5265607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KME66_RS23220 (KME66_23220) - 5253745..5254941 (-) 1197 WP_073216486.1 epoxide hydrolase family protein -
  KME66_RS23225 (KME66_23225) - 5255048..5255683 (+) 636 WP_253208453.1 ABATE domain-containing protein -
  KME66_RS23230 (KME66_23230) - 5255643..5256227 (-) 585 WP_216325530.1 hypothetical protein -
  KME66_RS23235 (KME66_23235) - 5256424..5257530 (+) 1107 WP_253208454.1 sensor histidine kinase -
  KME66_RS23240 (KME66_23240) - 5257573..5258262 (+) 690 WP_216325533.1 response regulator transcription factor -
  KME66_RS23245 (KME66_23245) recD/recD2/recDB 5258382..5260607 (+) 2226 WP_216325536.1 ATP-dependent RecD-like DNA helicase Machinery gene
  KME66_RS23250 (KME66_23250) - 5260823..5262121 (+) 1299 WP_010056523.1 citrate synthase -
  KME66_RS23255 (KME66_23255) - 5262776..5265208 (-) 2433 WP_216325539.1 heavy metal translocating P-type ATPase -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 79797.21 Da        Isoelectric Point: 6.6498

>NTDB_id=502680 KME66_RS23245 WP_216325536.1 5258382..5260607(+) (recD/recD2/recDB) [Streptomyces sp. YPW6]
MSNMAVLEGVLERITYANEENGYTVARVDTGRGAGDLLTVVGALLGAQVGESLRMEGRWGSHAQYGKQFTVENYTTVLPA
TIQGIRRYLGSGLIKGIGPVMADRITTHFGVDTLDVIEQEPKRLVEVPGLGPKRTKMIAAAWEEQKAIKEVMVFLQGVGV
STSIAVRIYKKYEDASISVVRNQPYRLAADVWGIGFLTADKIAQAVGIPHDSPERVKAGLQYALSQSSDQGHCYLPEERL
IADGVKLLQVDTGLVIECLAELAADPEGVVREKVPSPEGGEPVTAVYLVPFHRAELSLAGQVRRLLNTGEDRMPAFRDVD
WGKALAWLATRTGADLAPEQEQAVRLALSRKVAVLTGGPGCGKSFTVRSIVELARAKKAKVVLAAPTGRAAKRLSELTGA
EASTVHRLLELKPGGDAAYDRDRPLDADLVVVDEASMLDLLLANKLVKAVAPGAHLLLVGDVDQLPSVGAGEVLSDLLAE
GGPVPAVRLTRIFRQAQQSGVVTNAHRINAGQPPLTEGLSDFFLFVEDETEDAGRLAVDVAARRVPAKFGFDARRDVQVL
APMHRGPAGAGHLNGLLQQAITPGRPDLPEKRFGGRVFRVGDKVTQIRNNYDKGENGVFNGTVGVVTALDPDEQKLTVRT
DEDEEIGYDFDELDELAHAYAMTIHRSQGSEYPAVVIPVTTSAWMMLQRNLLYTAVTRARKLVVLVGSRKAIGQAVRTVS
AGRRCTALDFRLRGGSGADFS

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=502680 KME66_RS23245 WP_216325536.1 5258382..5260607(+) (recD/recD2/recDB) [Streptomyces sp. YPW6]
ATGTCGAACATGGCCGTCCTCGAAGGGGTCCTGGAGCGGATCACCTACGCCAACGAGGAGAACGGGTACACGGTGGCGCG
CGTCGACACCGGGCGCGGAGCCGGCGACCTCCTCACCGTGGTCGGTGCGCTGCTCGGCGCGCAGGTCGGCGAGTCGCTGC
GGATGGAGGGCCGTTGGGGCTCGCACGCGCAGTACGGCAAGCAGTTCACCGTGGAGAACTACACCACCGTGCTGCCCGCC
ACCATCCAGGGCATCCGCCGCTATCTGGGCTCCGGGCTGATCAAGGGCATCGGGCCGGTGATGGCCGACCGGATCACCAC
CCACTTCGGCGTCGACACCCTCGACGTCATCGAGCAGGAACCGAAGCGGCTCGTCGAGGTCCCCGGCCTCGGCCCCAAGC
GCACGAAGATGATCGCGGCGGCCTGGGAGGAACAGAAGGCGATCAAGGAGGTCATGGTCTTCCTCCAGGGTGTCGGCGTC
TCCACCTCCATCGCCGTCCGCATCTACAAGAAGTACGAGGACGCCTCCATCTCCGTCGTGAGGAACCAGCCCTACCGGCT
GGCCGCCGACGTCTGGGGCATCGGCTTCCTCACCGCGGACAAGATCGCCCAGGCCGTCGGCATCCCGCACGACAGCCCCG
AGCGGGTCAAGGCCGGGCTGCAGTACGCGCTGTCCCAGTCCTCCGACCAGGGGCACTGCTACCTCCCCGAGGAACGGCTC
ATCGCGGACGGCGTCAAGCTGCTCCAGGTCGACACCGGGCTGGTCATCGAGTGCCTGGCCGAGCTCGCCGCCGACCCGGA
GGGCGTCGTACGGGAGAAGGTGCCGTCCCCCGAGGGCGGCGAGCCGGTCACGGCGGTCTACCTCGTCCCGTTCCACCGGG
CCGAGCTGTCCCTCGCCGGGCAGGTGCGGCGGCTGCTGAACACCGGCGAGGACCGGATGCCCGCCTTCCGGGACGTCGAC
TGGGGCAAGGCCCTGGCCTGGCTCGCCACGCGTACGGGGGCCGATCTCGCGCCCGAGCAGGAGCAGGCCGTGCGTCTCGC
GCTCAGCCGCAAGGTGGCCGTCCTGACCGGCGGCCCCGGCTGCGGGAAGTCGTTCACCGTCCGGTCGATCGTCGAGCTGG
CCCGGGCGAAGAAGGCCAAGGTGGTGCTCGCCGCCCCCACCGGGCGCGCCGCCAAACGTCTCTCCGAGCTGACCGGGGCC
GAGGCGTCCACCGTGCACCGGCTGCTGGAGCTCAAGCCGGGCGGGGACGCGGCGTACGACCGGGACCGCCCCCTGGACGC
CGATCTGGTCGTCGTCGACGAGGCGTCGATGCTCGATCTGCTGCTCGCCAACAAGCTCGTGAAGGCGGTGGCACCCGGTG
CCCACCTCCTCCTCGTGGGCGACGTGGACCAGCTGCCCTCGGTCGGCGCGGGGGAGGTGCTGAGCGATCTGCTCGCGGAG
GGCGGACCGGTCCCCGCCGTCCGGCTCACCCGGATCTTCCGCCAGGCCCAGCAGTCCGGAGTGGTCACCAACGCCCACCG
CATCAACGCCGGACAGCCGCCCCTCACCGAGGGGCTGAGCGACTTCTTCCTCTTCGTCGAGGACGAGACGGAGGACGCGG
GCAGGCTCGCCGTCGATGTCGCGGCCCGTCGTGTTCCGGCCAAATTCGGGTTCGACGCCCGCCGGGACGTGCAGGTCCTC
GCCCCGATGCACCGGGGCCCGGCCGGCGCGGGCCATCTGAACGGGCTGCTCCAGCAGGCCATCACCCCCGGCCGCCCCGA
CCTCCCCGAGAAGCGGTTCGGCGGGCGGGTTTTCAGGGTCGGCGACAAGGTCACCCAGATCCGCAACAACTACGACAAGG
GCGAGAACGGCGTTTTCAACGGCACCGTCGGCGTCGTCACCGCCCTCGACCCGGACGAACAGAAGCTCACCGTCCGCACC
GACGAGGACGAGGAGATCGGCTACGACTTCGACGAGCTGGACGAGCTGGCCCACGCGTACGCCATGACGATCCACCGCTC
CCAGGGCAGCGAGTATCCCGCCGTCGTCATCCCCGTCACCACCAGTGCCTGGATGATGCTCCAGCGCAACCTGCTCTACA
CCGCCGTGACGCGGGCCAGGAAGCTCGTCGTCCTCGTCGGGTCCCGTAAGGCGATCGGCCAGGCGGTCCGCACGGTTTCC
GCAGGCCGGCGCTGTACGGCACTGGATTTCCGGCTCCGGGGCGGCTCCGGCGCAGACTTCTCGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(144-234)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(658-706)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(573-639)

AAA domain (AAA_30)

(336-514)

Helix-hairpin-helix domain (HHH_5)

(94-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.256

100

0.363