Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   HBHAL_RS12785 Genome accession   NC_017668
Coordinates   2575187..2577511 (-) Length   774 a.a.
NCBI ID   WP_014643852.1    Uniprot ID   I0JP93
Organism   Halobacillus halophilus DSM 2266     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2570187..2582511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBHAL_RS12770 (HBHAL_3615) - 2573044..2574111 (-) 1068 WP_014643850.1 AI-2E family transporter -
  HBHAL_RS12780 (HBHAL_3616) - 2574351..2575166 (-) 816 WP_014643851.1 sugar phosphate isomerase/epimerase -
  HBHAL_RS12785 (HBHAL_3617) recD2 2575187..2577511 (-) 2325 WP_014643852.1 ATP-dependent RecD-like DNA helicase Machinery gene
  HBHAL_RS12790 (HBHAL_3618) - 2577533..2578192 (-) 660 WP_014643853.1 lipopolysaccharide assembly protein LapB -
  HBHAL_RS12795 (HBHAL_3620) mnmA 2578258..2579370 (-) 1113 WP_014643854.1 tRNA 2-thiouridine(34) synthase MnmA -
  HBHAL_RS12800 (HBHAL_3621) - 2579376..2580527 (-) 1152 WP_014643855.1 cysteine desulfurase family protein -
  HBHAL_RS12805 (HBHAL_3622) cymR 2580546..2580965 (-) 420 WP_014643856.1 cysteine metabolism transcriptional regulator CymR -
  HBHAL_RS12810 (HBHAL_3623) - 2580919..2581602 (-) 684 WP_014643857.1 YitT family protein -

Sequence

Protein


Download         Length: 774 a.a.        Molecular weight: 88225.12 Da        Isoelectric Point: 4.8099

>NTDB_id=50260 HBHAL_RS12785 WP_014643852.1 2575187..2577511(-) (recD2) [Halobacillus halophilus DSM 2266]
MTQQTLFSESNEDRPYVKGELNRMIFHNEAEHFSIAAITVSETNEDTDVDSLVIKGHFSPLEEGETYIFYGQFRNHPKFG
LQYEVEMYNRVLPETKDGLIHYLSSDLFHGIGKRTAERIVDQLGEQAISFILEDRAALDKVPKLTKEKADQLYNSLKEHQ
GFEHVMIHLSQYGFGLKLSQKIYEVFKDQTLAIIEEDPYQLVFKVEGFGFHRADEMARMQNLSHDHPTRLRAACLYMMQK
SMSAGHTYLPTEECLVQVDQLLNTGLEASISFDQLSEQIIHLGQEKYVYIEEERIYLPTLYFAENGFCRNIERILEGELE
TQHTQADLMKIIGSIEEEEAMSYGEDQFNAIEKTLQSKLMILTGGPGTGKTTVIKGIIQSYAELNDVSIDPEDYDSDQPL
PFVLAAPTGRAAKRMTESTGMPASTIHRLLGWDGHEQFERNQNNPLEGKVLIIDEFSMVDIWLANQLFRAVPSGMQVLLV
GDEDQLPSVGPGQVLADLLASEQLPSSKLTEVYRQKEGSKIIQLAHEIKNNQCTAVSLAKEHDFNFIPARENQLADIVTH
IVKKAIDKGINLRELQVLVPMYRTEVGIHKLNSEIQRVVNPKSKQKRDIQFNDQTYRKGDKVIQLVNQPEDGVYNGDIGE
IVAIFREEENVDGVEQVVVDFDGKEIVYPKKDLNNVMLAYCTSIHKSQGSEFSIVILPVVRSYKRMLRKNLLYTAITRSK
QSLIICGDRNAFLEGVKSMDTNLRYTRLKEKLQEKVVPEAPENEEEELSPYDFM

Nucleotide


Download         Length: 2325 bp        

>NTDB_id=50260 HBHAL_RS12785 WP_014643852.1 2575187..2577511(-) (recD2) [Halobacillus halophilus DSM 2266]
ATGACACAACAAACGCTTTTTTCTGAATCGAATGAAGACCGTCCTTATGTTAAAGGTGAACTCAATCGAATGATCTTTCA
TAATGAGGCTGAGCATTTTTCCATCGCGGCGATCACTGTAAGTGAAACAAATGAAGATACAGATGTGGACTCACTGGTGA
TTAAAGGACACTTTTCTCCTCTGGAAGAAGGAGAAACCTATATCTTTTATGGTCAATTTCGTAACCACCCGAAATTTGGA
CTGCAATACGAGGTAGAGATGTATAATCGTGTCTTGCCTGAAACAAAAGATGGGCTGATTCACTATTTATCGAGTGATTT
ATTTCACGGCATAGGTAAAAGGACGGCTGAGCGTATCGTTGATCAATTAGGAGAACAAGCGATATCGTTTATATTAGAAG
ACAGAGCTGCTTTAGATAAAGTACCTAAGCTTACTAAGGAAAAAGCGGATCAATTATACAATTCTCTAAAGGAACATCAA
GGTTTTGAACACGTGATGATTCATCTTTCCCAATACGGGTTTGGGTTGAAGTTATCTCAGAAAATTTATGAAGTCTTTAA
AGATCAAACCCTTGCCATTATTGAAGAAGATCCTTACCAGCTTGTATTTAAAGTCGAAGGTTTCGGTTTTCACCGGGCAG
ATGAAATGGCGAGGATGCAGAATCTTTCTCATGATCACCCTACCAGACTCCGGGCAGCATGTTTGTACATGATGCAAAAA
AGCATGTCTGCTGGTCACACTTACCTTCCTACTGAAGAATGTCTTGTCCAGGTTGATCAGTTACTAAACACAGGACTTGA
AGCTTCTATCTCATTCGATCAGCTATCCGAGCAAATCATCCATCTGGGGCAGGAAAAGTATGTATATATAGAAGAAGAGC
GTATCTACTTACCTACGCTATATTTCGCAGAAAACGGCTTTTGCCGTAATATCGAACGTATTCTAGAAGGAGAGTTGGAA
ACCCAGCATACGCAGGCAGATCTCATGAAGATTATTGGAAGCATTGAAGAAGAGGAAGCAATGAGTTATGGAGAAGACCA
ATTTAATGCAATTGAGAAAACGTTACAGTCCAAGCTTATGATTCTGACTGGAGGCCCCGGAACTGGAAAAACAACGGTTA
TCAAGGGAATTATCCAGTCTTATGCAGAGTTAAATGACGTCTCGATTGATCCGGAAGACTATGATTCGGATCAGCCTTTG
CCTTTTGTCTTGGCTGCACCAACAGGACGGGCTGCTAAACGTATGACGGAGTCAACTGGCATGCCTGCAAGCACGATCCA
CCGATTGCTCGGATGGGATGGTCATGAACAATTTGAGCGCAACCAGAATAATCCTTTAGAAGGGAAGGTTCTCATCATTG
ATGAATTTTCGATGGTGGATATTTGGCTTGCCAACCAATTGTTCCGTGCTGTTCCTTCAGGTATGCAGGTACTCCTCGTA
GGTGATGAAGATCAACTTCCTTCTGTAGGTCCCGGTCAAGTACTTGCCGATCTCCTTGCTTCCGAACAACTCCCATCATC
CAAACTGACGGAAGTGTACCGTCAAAAAGAAGGTTCAAAAATCATTCAGCTTGCGCATGAGATTAAAAATAATCAGTGTA
CTGCGGTATCACTGGCTAAAGAGCATGATTTCAATTTCATACCTGCACGTGAGAATCAGCTTGCTGATATCGTTACCCAT
ATTGTAAAAAAAGCGATCGATAAGGGTATTAACCTTAGAGAATTGCAAGTCCTTGTTCCGATGTACCGCACAGAAGTTGG
TATTCATAAGCTGAATTCGGAGATTCAGCGAGTGGTAAATCCCAAAAGCAAGCAGAAGCGGGATATCCAATTTAATGACC
AAACATATCGAAAAGGTGATAAAGTCATTCAGTTGGTTAATCAGCCCGAAGACGGAGTTTATAATGGAGATATAGGCGAA
ATTGTTGCGATATTTCGCGAGGAAGAAAATGTAGATGGTGTAGAACAGGTCGTCGTGGATTTTGACGGAAAAGAAATCGT
TTATCCAAAAAAAGATTTGAACAATGTAATGCTCGCATATTGTACATCGATCCATAAATCGCAAGGAAGTGAGTTTTCAA
TTGTCATTCTTCCGGTAGTACGAAGCTATAAAAGGATGCTTAGGAAAAATTTGCTCTACACAGCTATCACCCGTTCTAAG
CAATCGCTAATCATCTGTGGAGATCGCAATGCATTTCTCGAAGGTGTAAAGTCTATGGATACAAACCTTCGTTATACAAG
GCTAAAAGAAAAACTTCAGGAGAAGGTGGTCCCGGAAGCGCCGGAAAATGAGGAAGAAGAATTGTCCCCTTACGATTTTA
TGTGA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-661)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(679-726)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-248)

AAA domain (AAA_30)

(343-543)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I0JP93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

48.276

100

0.488

Multiple sequence alignment