Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   KMZ16_RS08095 Genome accession   NZ_CP076445
Coordinates   1544426..1544875 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis subsp. subtilis strain ps4100     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1539426..1549875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KMZ16_RS08055 (KMZ16_08000) ctaE 1539442..1540065 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  KMZ16_RS08060 (KMZ16_08005) ctaF 1540068..1540400 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  KMZ16_RS08065 (KMZ16_08010) ctaG 1540428..1541321 (+) 894 WP_003244967.1 cytochrome c oxidase assembly factor CtaG -
  KMZ16_RS08070 (KMZ16_08015) ylbA 1541353..1541715 (-) 363 WP_003232238.1 YugN family protein -
  KMZ16_RS08075 (KMZ16_08020) ylbB 1541855..1542301 (+) 447 WP_029726520.1 CBS domain-containing protein -
  KMZ16_RS08080 (KMZ16_08025) ylbC 1542385..1543425 (+) 1041 WP_014479713.1 CAP domain-containing protein -
  KMZ16_RS08085 (KMZ16_08030) ylbD 1543657..1544055 (+) 399 WP_003232233.1 YlbD family protein -
  KMZ16_RS08090 (KMZ16_08035) ylbE 1544071..1544310 (+) 240 WP_003232231.1 YlbE-like family protein -
  KMZ16_RS08095 (KMZ16_08040) ylbF 1544426..1544875 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  KMZ16_RS08100 (KMZ16_08045) ylbG 1544930..1545202 (+) 273 WP_024573211.1 YlbG family protein -
  KMZ16_RS08105 (KMZ16_08050) rsmD 1545525..1546079 (+) 555 WP_029726518.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  KMZ16_RS08110 (KMZ16_08055) coaD 1546084..1546569 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  KMZ16_RS08115 (KMZ16_08060) spoVV 1546580..1547806 (-) 1227 WP_029726517.1 dipicolinic acid transporter SpoVV -
  KMZ16_RS08120 (KMZ16_08065) ylbK 1547987..1548769 (+) 783 WP_003232221.1 patatin family protein -
  KMZ16_RS08125 (KMZ16_08070) sepM 1548771..1549796 (+) 1026 WP_029726516.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=502488 KMZ16_RS08095 WP_003221370.1 1544426..1544875(+) (ylbF) [Bacillus subtilis subsp. subtilis strain ps4100]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=502488 KMZ16_RS08095 WP_003221370.1 1544426..1544875(+) (ylbF) [Bacillus subtilis subsp. subtilis strain ps4100]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1