Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   KMZ16_RS06180 Genome accession   NZ_CP076445
Coordinates   1198419..1199336 (+) Length   305 a.a.
NCBI ID   WP_003232954.1    Uniprot ID   A0A9W5LHY5
Organism   Bacillus subtilis subsp. subtilis strain ps4100     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1193419..1204336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KMZ16_RS06165 (KMZ16_06130) trpS 1193998..1194990 (-) 993 WP_003245134.1 tryptophan--tRNA ligase -
  KMZ16_RS06170 (KMZ16_06135) oppA 1195735..1197372 (+) 1638 WP_015252360.1 oligopeptide ABC transporter substrate-binding protein OppA -
  KMZ16_RS06175 (KMZ16_06140) oppB 1197480..1198415 (+) 936 WP_003245554.1 oligopeptide ABC transporter permease OppB -
  KMZ16_RS06180 (KMZ16_06145) amiD 1198419..1199336 (+) 918 WP_003232954.1 oligopeptide ABC transporter permease OppC Regulator
  KMZ16_RS06185 (KMZ16_06150) oppD 1199341..1200417 (+) 1077 WP_077670618.1 oligopeptide ABC transporter ATP-binding protein OppD -
  KMZ16_RS06190 (KMZ16_06155) oppF 1200419..1201336 (+) 918 WP_069703689.1 oligopeptide ABC transporter ATP-binding protein OppF -
  KMZ16_RS06195 (KMZ16_06160) yjbB 1201443..1202660 (+) 1218 WP_080477793.1 MFS transporter -
  KMZ16_RS06200 (KMZ16_06165) yjbC 1202824..1203402 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  KMZ16_RS06205 (KMZ16_06170) spx 1203583..1203978 (+) 396 WP_014476435.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=502473 KMZ16_RS06180 WP_003232954.1 1198419..1199336(+) (amiD) [Bacillus subtilis subsp. subtilis strain ps4100]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=502473 KMZ16_RS06180 WP_003232954.1 1198419..1199336(+) (amiD) [Bacillus subtilis subsp. subtilis strain ps4100]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTGCTCATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTTTTAAATGCGGATAAGCCCCCT
TCAAAAGATCACTGGTTCGGCACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATCGGTGTCGCAGCCGCTGTTCTCGATTTGCTGATCGGCGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGAA
GAACAGATGAAATCATGATGCGCATCGCTGACATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGGCTATTTACGATTATTATTGCCATGACGATTACGGGCTGGATTAACATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAAGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTGCTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCCATTTTGGTCACGATGACATTGACAGTTCCTACTGCGATTTTCACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTCAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9W5LHY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364