Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   RSAU_RS07910 Genome accession   NC_022222
Coordinates   1607248..1608522 (+) Length   424 a.a.
NCBI ID   WP_000102738.1    Uniprot ID   -
Organism   Staphylococcus aureus subsp. aureus 6850     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1602248..1613522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RSAU_RS07880 (RSAU_001483) mnmA 1602450..1603568 (-) 1119 WP_020977312.1 tRNA 2-thiouridine(34) synthase MnmA -
  RSAU_RS07885 (RSAU_001484) - 1603569..1604711 (-) 1143 WP_000409169.1 cysteine desulfurase family protein -
  RSAU_RS07890 (RSAU_001485) - 1605023..1606036 (+) 1014 WP_000985896.1 LLM class flavin-dependent oxidoreductase -
  RSAU_RS07895 (RSAU_001486) - 1606273..1606419 (-) 147 WP_000009238.1 SAS049 family protein -
  RSAU_RS07900 (RSAU_001487) - 1606459..1606641 (-) 183 WP_000752909.1 CsbD family protein -
  RSAU_RS07905 (RSAU_001488) cymR 1606741..1607163 (-) 423 WP_000704122.1 cysteine metabolism transcriptional regulator CymR -
  RSAU_RS07910 (RSAU_001489) rarA 1607248..1608522 (+) 1275 WP_000102738.1 replication-associated recombination protein A Machinery gene
  RSAU_RS07915 (RSAU_001490) - 1608683..1609456 (-) 774 WP_000682646.1 ThiF family adenylyltransferase -
  RSAU_RS07920 - 1609456..1609584 (-) 129 WP_014937034.1 hypothetical protein -
  RSAU_RS07925 (RSAU_001491) aspS 1609917..1611683 (-) 1767 WP_000044799.1 aspartate--tRNA ligase -
  RSAU_RS07930 (RSAU_001492) hisS 1611699..1612961 (-) 1263 WP_000590826.1 histidine--tRNA ligase -

Sequence

Protein


Download         Length: 424 a.a.        Molecular weight: 47234.81 Da        Isoelectric Point: 8.3539

>NTDB_id=50240 RSAU_RS07910 WP_000102738.1 1607248..1608522(+) (rarA) [Staphylococcus aureus subsp. aureus 6850]
MSTEPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKD
MQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQAL
TRAIEDEENGLKTYQPKIDEDAMAYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDM
HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQ
AVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDGHYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKNKIYY
EPKTTSKSEQQLKEIYNNLLKQRP

Nucleotide


Download         Length: 1275 bp        

>NTDB_id=50240 RSAU_RS07910 WP_000102738.1 1607248..1608522(+) (rarA) [Staphylococcus aureus subsp. aureus 6850]
GTGAGTACAGAACCATTAGCATCGAGAATGCGCCCAAAAAATATAGATGAAATCATTTCCCAACAACATTTAGTTGGACC
AAGAGGCATTATCAGAAGAATGGTTGATACAAAAAAATTAACTTCAATGATTTTTTATGGTCCACCTGGTATAGGCAAAA
CAAGTATTGCCAAAGCAATTTCGGGCAGTACGCAATATAAATTCAGACAATTGAATGCTGTAACTAACACTAAAAAAGAT
ATGCAACTTGTTGTTGAAGAAGCTAAAATGTCTGGTCAAGTTATCTTGTTATTAGATGAAATACATCGACTAGATAAAGC
TAAACAAGACTTTTTATTACCTCATTTAGAAAATGGCAAAATCGTCTTGATCGGTGCTACAACTTCAAATCCTTATCATG
CTATCAATCCAGCGATTCGTTCAAGAGCGCAAATTTTTGAGTTATATCCTTTAAATGATGAAGATGTGCGCCAAGCGTTA
ACTCGTGCAATAGAGGATGAAGAGAATGGTTTAAAAACATATCAACCCAAAATTGATGAAGATGCCATGGCCTACTTTTC
TACACAAAGTCAAGGTGATGTTCGTAGTGCGTTAAATGCATTGGAATTAGCTGTATTAAGCGCAGATAATGACAAAGACG
GTTATCGACATGTTACATTGCAAGATGCTAAAGATTGTTTACAAAAAGGTGCATTTGTAAGTGATAAAGATGGTGACATG
CATTACGATGTTATGAGCGCTTTCCAAAAATCTATCCGTGGTAGCGACGTCAATGCCGCTTTACATTATTTAGCACGATT
AATTGAAGCTGGAGATTTACCTACAATAGTTCGACGATTACTTGTAATTAGCTACGAGGATATAGGCTTAGCCTCACCTA
ATGCTGGTCAGAGAACACTTGCTGCTATTGAATCAGCAGAACGTCTAGGTTTACCAGAAGCTAGGATACCACTAAGCCAA
GCAGTAATCGAACTATGCTTATCACCTAAGTCAAATTCAGCAATGAGTGCCATTGATAGTGCATTGTCCGATATTAGAAA
CGGTCATGTGGGCCAAATTCCAAACCATTTAAAAGATGGACATTATCAAGGTGCTAAAGATCTAGGCCGATCTATTGGTT
ACAAATATCCACACCAATATGTTAATGGCTATGTTTCACAGCAATATTTACCTGATAAACTAAAAAACAAAATTTATTAT
GAACCAAAAACGACATCTAAAAGTGAACAACAACTCAAAGAAATATATAACAACTTACTTAAACAAAGGCCGTAA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(254-418)

AAA C-terminal domain (AAA_assoc_2)

(175-253)

ATPase family associated with various cellular activities (AAA) (AAA)

(43-145)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

69.286

99.057

0.686