Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   KNN06_RS13565 Genome accession   NZ_CP076301
Coordinates   2778903..2779370 (+) Length   155 a.a.
NCBI ID   WP_000340159.1    Uniprot ID   -
Organism   Escherichia coli strain Survcare321     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2773903..2784370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KNN06_RS13520 (KNN06_13520) rplP 2774013..2774423 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  KNN06_RS13525 (KNN06_13525) rpsC 2774436..2775137 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  KNN06_RS13530 (KNN06_13530) rplV 2775155..2775487 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  KNN06_RS13535 (KNN06_13535) rpsS 2775502..2775780 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  KNN06_RS13540 (KNN06_13540) rplB 2775797..2776618 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  KNN06_RS13545 (KNN06_13545) rplW 2776636..2776938 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  KNN06_RS13550 (KNN06_13550) rplD 2776935..2777540 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  KNN06_RS13555 (KNN06_13555) rplC 2777551..2778180 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  KNN06_RS13560 (KNN06_13560) rpsJ 2778213..2778524 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  KNN06_RS13565 (KNN06_13565) pilD 2778903..2779370 (+) 468 WP_000340159.1 A24 family peptidase Machinery gene
  KNN06_RS13570 (KNN06_13570) bfr 2779367..2779843 (-) 477 WP_000675515.1 bacterioferritin -
  KNN06_RS13575 (KNN06_13575) bfd 2779916..2780110 (-) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  KNN06_RS13580 (KNN06_13580) tuf 2780293..2781477 (-) 1185 WP_000031783.1 elongation factor Tu -
  KNN06_RS13585 (KNN06_13585) fusA 2781548..2783662 (-) 2115 WP_000124703.1 elongation factor G -
  KNN06_RS13590 (KNN06_13590) rpsG 2783759..2784229 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17034.17 Da        Isoelectric Point: 8.1255

>NTDB_id=501984 KNN06_RS13565 WP_000340159.1 2778903..2779370(+) (pilD) [Escherichia coli strain Survcare321]
MDATLPFLILYACLSALLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVIGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=501984 KNN06_RS13565 WP_000340159.1 2778903..2779370(+) (pilD) [Escherichia coli strain Survcare321]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCAGCCCTACTTTTTTTCTGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACGTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTATCAAGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACATGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTATTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGCTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(11-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.882

81.935

0.368