Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   A7A21_RS18910 Genome accession   NZ_CP076276
Coordinates   3839773..3840537 (+) Length   254 a.a.
NCBI ID   WP_001614016.1    Uniprot ID   -
Organism   Escherichia coli strain SA31-1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 3834773..3845537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7A21_RS18890 (A7A21_18835) acpT 3835727..3836314 (+) 588 WP_000285783.1 4'-phosphopantetheinyl transferase AcpT -
  A7A21_RS18895 (A7A21_18840) nikA 3836425..3837999 (+) 1575 WP_021554577.1 nickel ABC transporter substrate-binding protein -
  A7A21_RS18900 (A7A21_18845) nikB 3837999..3838943 (+) 945 WP_000947068.1 nickel ABC transporter permease subunit NikB -
  A7A21_RS18905 (A7A21_18850) nikC 3838940..3839773 (+) 834 WP_001008963.1 nickel ABC transporter permease subunit NikC -
  A7A21_RS18910 (A7A21_18855) amiE 3839773..3840537 (+) 765 WP_001614016.1 nickel import ATP-binding protein NikD Regulator
  A7A21_RS18915 (A7A21_18860) nikE 3840534..3841340 (+) 807 WP_000173666.1 nickel import ATP-binding protein NikE -
  A7A21_RS18920 (A7A21_18865) nikR 3841346..3841747 (+) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  A7A21_RS18925 (A7A21_18870) - 3841946..3842692 (+) 747 WP_001296489.1 GntR family transcriptional regulator -
  A7A21_RS18930 (A7A21_18875) - 3842716..3843189 (+) 474 WP_021554578.1 PTS sugar transporter subunit IIA -
  A7A21_RS18935 (A7A21_18880) - 3843186..3843467 (+) 282 WP_000084022.1 PTS sugar transporter subunit IIB -
  A7A21_RS18940 (A7A21_18885) - 3843544..3844110 (+) 567 Protein_3722 PTS transporter subunit IIC -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26833.46 Da        Isoelectric Point: 6.8311

>NTDB_id=501688 A7A21_RS18910 WP_001614016.1 3839773..3840537(+) (amiE) [Escherichia coli strain SA31-1]
MPQQIELRNIALQAAQPLVHGVSLTLKRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSQGKIVEQGDVETLFNAPKHTVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=501688 A7A21_RS18910 WP_001614016.1 3839773..3840537(+) (amiE) [Escherichia coli strain SA31-1]
ATGCCGCAACAGATTGAACTACGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTGCACGGCGTATCGTTAACCCTTAA
ACGCGGGCGTGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCACTGACCTGCGCCGCGACGCTGGGCATTTTGC
CCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAACCTGCCT
GGCGTTAGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGC
TGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCG
TTTATCATCGCCGATGAACCGACCACCGACCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCGCCGGGAATGCTGCTGGTCACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGA
TGTCACAAGGTAAAATTGTCGAACAGGGCGATGTAGAAACGCTGTTTAACGCCCCCAAACATACGGTGACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398