Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   A7A11_RS19465 Genome accession   NZ_CP076272
Coordinates   3931633..3932397 (+) Length   254 a.a.
NCBI ID   WP_001136236.1    Uniprot ID   A7ZT17
Organism   Escherichia coli strain E21845/O/A     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 3926633..3937397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7A11_RS19445 acpT 3927587..3928174 (+) 588 WP_000285784.1 4'-phosphopantetheinyl transferase AcpT -
  A7A11_RS19450 nikA 3928285..3929859 (+) 1575 WP_000953353.1 nickel ABC transporter substrate-binding protein -
  A7A11_RS19455 nikB 3929859..3930803 (+) 945 WP_032254808.1 nickel ABC transporter permease subunit NikB -
  A7A11_RS19460 nikC 3930800..3931633 (+) 834 WP_001008963.1 nickel ABC transporter permease subunit NikC -
  A7A11_RS19465 amiE 3931633..3932397 (+) 765 WP_001136236.1 nickel import ATP-binding protein NikD Regulator
  A7A11_RS19470 nikE 3932394..3933200 (+) 807 WP_000173666.1 nickel import ATP-binding protein NikE -
  A7A11_RS19475 nikR 3933206..3933607 (+) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  A7A11_RS19480 - 3933727..3934086 (-) 360 WP_000593555.1 type II toxin-antitoxin system HicB family antitoxin -
  A7A11_RS19485 - 3934083..3934313 (-) 231 WP_042014162.1 type II toxin-antitoxin system HicA family toxin -
  A7A11_RS19490 yhhJ 3934417..3935541 (-) 1125 WP_001314210.1 ABC transporter permease -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26833.42 Da        Isoelectric Point: 6.5992

>NTDB_id=501529 A7A11_RS19465 WP_001136236.1 3931633..3932397(+) (amiE) [Escherichia coli strain E21845/O/A]
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSQGKIVEQGDVETLFNAPKHTVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=501529 A7A11_RS19465 WP_001136236.1 3931633..3932397(+) (amiE) [Escherichia coli strain E21845/O/A]
ATGCCGCAACAGATTGAACTACGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTACACGGTGTATCGTTAACCCTGCA
ACGCGGGCGCGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCATTAACCTGCGCCGCGACGCTGGGCATTTTGC
CCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAACCTGCCT
GGCGTTAGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGC
TGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCG
TTTATCATCGCCGATGAACCGACCACCGACCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCGCCGGGAATGCTGCTGGTCACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGA
TGTCACAAGGTAAAATTGTCGAACAGGGCGATGTAGAAACGCTGTTTAACGCCCCCAAACATACGGTGACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZT17

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398