Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   A7A11_RS18735 Genome accession   NZ_CP076272
Coordinates   3780261..3780728 (+) Length   155 a.a.
NCBI ID   WP_000340167.1    Uniprot ID   A7ZSL1
Organism   Escherichia coli strain E21845/O/A     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3775261..3785728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7A11_RS18690 rplP 3775371..3775781 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  A7A11_RS18695 rpsC 3775794..3776495 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  A7A11_RS18700 rplV 3776513..3776845 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  A7A11_RS18705 rpsS 3776860..3777138 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  A7A11_RS18710 rplB 3777155..3777976 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  A7A11_RS18715 rplW 3777994..3778296 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  A7A11_RS18720 rplD 3778293..3778898 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  A7A11_RS18725 rplC 3778909..3779538 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  A7A11_RS18730 rpsJ 3779571..3779882 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  A7A11_RS18735 pilD 3780261..3780728 (+) 468 WP_000340167.1 A24 family peptidase Machinery gene
  A7A11_RS18740 bfr 3780725..3781201 (-) 477 WP_000675515.1 bacterioferritin -
  A7A11_RS18745 bfd 3781274..3781468 (-) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  A7A11_RS18750 tuf 3781651..3782835 (-) 1185 WP_000031783.1 elongation factor Tu -
  A7A11_RS18755 fusA 3782906..3785020 (-) 2115 WP_000124700.1 elongation factor G -
  A7A11_RS18760 rpsG 3785117..3785587 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16984.17 Da        Isoelectric Point: 8.0293

>NTDB_id=501524 A7A11_RS18735 WP_000340167.1 3780261..3780728(+) (pilD) [Escherichia coli strain E21845/O/A]
MDATLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDCLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=501524 A7A11_RS18735 WP_000340167.1 3780261..3780728(+) (pilD) [Escherichia coli strain E21845/O/A]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACTGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZSL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361