Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   A7A14_RS18055 Genome accession   NZ_CP076270
Coordinates   3694741..3695208 (+) Length   155 a.a.
NCBI ID   WP_000339836.1    Uniprot ID   -
Organism   Escherichia coli strain Ceylon31     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3689741..3700208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7A14_RS18010 (A7A14_17980) rplP 3689851..3690261 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  A7A14_RS18015 (A7A14_17985) rpsC 3690274..3690975 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  A7A14_RS18020 (A7A14_17990) rplV 3690993..3691325 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  A7A14_RS18025 (A7A14_17995) rpsS 3691340..3691618 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  A7A14_RS18030 (A7A14_18000) rplB 3691635..3692456 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  A7A14_RS18035 (A7A14_18005) rplW 3692474..3692776 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  A7A14_RS18040 (A7A14_18010) rplD 3692773..3693378 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  A7A14_RS18045 (A7A14_18015) rplC 3693389..3694018 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  A7A14_RS18050 (A7A14_18020) rpsJ 3694051..3694362 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  A7A14_RS18055 (A7A14_18025) pilD 3694741..3695208 (+) 468 WP_000339836.1 A24 family peptidase Machinery gene
  A7A14_RS18060 (A7A14_18030) bfr 3695205..3695681 (-) 477 WP_000675515.1 bacterioferritin -
  A7A14_RS18065 (A7A14_18035) bfd 3695754..3695948 (-) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  A7A14_RS18070 (A7A14_18040) tuf 3696131..3697315 (-) 1185 WP_000031783.1 elongation factor Tu -
  A7A14_RS18075 (A7A14_18045) fusA 3697386..3699500 (-) 2115 WP_000124700.1 elongation factor G -
  A7A14_RS18080 (A7A14_18050) rpsG 3699597..3700067 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16951.08 Da        Isoelectric Point: 8.1296

>NTDB_id=501442 A7A14_RS18055 WP_000339836.1 3694741..3695208(+) (pilD) [Escherichia coli strain Ceylon31]
MDANLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=501442 A7A14_RS18055 WP_000339836.1 3694741..3695208(+) (pilD) [Escherichia coli strain Ceylon31]
ATGGACGCTAACCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTAGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361